Gene Vapar_2206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2206 
Symbol 
ID7969920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2355597 
End bp2356319 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content69% 
IMG OID644792794 
ProductABC transporter related 
Protein accessionYP_002944107 
Protein GI239815197 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCAAC CCCCGTCTGA TGCCATTGTC GCAGTCGAGC ATGTGTTCAA GTCCGTGACC 
GACTCGACCG GTACGCTCGA CATTCTGCAG AACATCGATT TCACCCTGGG CGCGCGGGAG
ACCGCCGCCA TCGTGGGTGC CTCGGGTTCG GGCAAGAGCA CCTTGCTGTC GATCATTGCC
GGGCTCGACA CGCCCACGCG CGGCACCGTC AGGCTCGCGG GCGACGACAT CTTCGCCATC
GACGAGGACG AGCGCGCCGC GCTGCGCGCC CAGCGCGTGG GCTTCGTGTT CCAGAGCTTC
CAGCTGCTGG GCAACCTGAG CGCGCTCGAG AACGTGATGC TGCCGCTCGA ACTGGCCGAC
CGCAAGGATG CGCGCAAGGC CGCCACCGAG ATGCTCGGGC GCGTCGGCCT CGGCCAGCGG
CTCGGCCACT ATCCCAAGGT GCTCTCGGGC GGCGAGCAGC AGCGCGTGGC GCTGGCCAGG
GCCTTCGTGG TGCAGCCGGC GCTGCTGCTG GCCGACGAGC CCACCGGCAG CCTCGACTTC
GCGACCGGCG AGCAGGTCAT GCGGCTGATG TTCGACCTGA ACCGCGAACT CGGCACCACG
CTCGTGCTGG TCACGCACGA CCGCGGCATT GCGGCCCAGT GCGAGCGCCG CATCACCATC
GAGGCCGGGC GCATGGCGCT CAACGAGTCG ACGCCGGTGC TGGTGGCTTC GCTGCAGGCA
TGA
 
Protein sequence
MSQPPSDAIV AVEHVFKSVT DSTGTLDILQ NIDFTLGARE TAAIVGASGS GKSTLLSIIA 
GLDTPTRGTV RLAGDDIFAI DEDERAALRA QRVGFVFQSF QLLGNLSALE NVMLPLELAD
RKDARKAATE MLGRVGLGQR LGHYPKVLSG GEQQRVALAR AFVVQPALLL ADEPTGSLDF
ATGEQVMRLM FDLNRELGTT LVLVTHDRGI AAQCERRITI EAGRMALNES TPVLVASLQA