Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2195 |
Symbol | |
ID | 7969909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2346897 |
End bp | 2347802 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792783 |
Product | HflC protein |
Protein accession | YP_002944096 |
Protein GI | 239815186 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAGAA TCGGATTCAT CGCCTCGTCG ATCCTCGTCT TGCTCGTGCT GCTGAGCTCG ACCCTCTTCG TGGTCGACCA GCGCCAGTTC GGCGTGGTCT ATGCCCTTGG CCAGATCAAG AGCGTCATTA CCGAGCCGGG CCTCAACTTC AAGCTGCCGC CGCCGTTCCA GAACGTGTCG TACATCGACA AGCGGCTGCT CACGCTCTCC AGCCTCGACA CCGAGCCGAT GCTCACGGCC GAGAAGCAGC GCGTGGTGAT CGACTGGTAC GTGCGCTGGC GCATCACCGA TCCGCAGGCC TACATCCGCA ACGTCGGCCT CGACGAAAAC GCGGGCGCCA CGCAGCTCAA CCGCGTGGTG CGCAACGCCT TCCAGGAAAA CATCAACAAG CGCACCGTGC GCGACCTGAT CTCGGTGCGC CGCGAAGCGC TGATGGCCGA CGTGCAGCGC GAAGTGCTGG CCGTGGTGAA GGGGTCCAAG CCCTGGGGCG TGGACGTGGT CGACGTGCGC ATCACGCGTG TGGACTATGT GGAAGCCATC ACCGAATCGG TCTACCGCCG CATGGAGGCC GAGCGCAAGC GCGTGGCCAA CGAACTGCGC TCGACCGGTA CGGCCGAAGG TGAAAAGATC CGCGCCGACG CCGACCGCCA GCGCGAAGTG ATCGTGGCGA ACGCCTACCG CGATGCCCAG AAGATCAAGG GCGAGGGCGA CGCCCAGGCT GCCGCTGCGT ACAGCGAGGC CTTCGGCCGC GACCCGCAGT TCGCGCAGTT CTATCGCAGC CTCGAGGCCT ACAAGCAGAG CTTCAACAAG AAGAGCGACG TGATGGTGCT CGACCCGTCG TCGGACTTCT TCCGCGCCAT GCAGAGCTCG GGCACGCCCG CAGGCAACGC TCCCCCACGC CGCTGA
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Protein sequence | MNRIGFIASS ILVLLVLLSS TLFVVDQRQF GVVYALGQIK SVITEPGLNF KLPPPFQNVS YIDKRLLTLS SLDTEPMLTA EKQRVVIDWY VRWRITDPQA YIRNVGLDEN AGATQLNRVV RNAFQENINK RTVRDLISVR REALMADVQR EVLAVVKGSK PWGVDVVDVR ITRVDYVEAI TESVYRRMEA ERKRVANELR STGTAEGEKI RADADRQREV IVANAYRDAQ KIKGEGDAQA AAAYSEAFGR DPQFAQFYRS LEAYKQSFNK KSDVMVLDPS SDFFRAMQSS GTPAGNAPPR R
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