Gene Vapar_2194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2194 
Symbol 
ID7969908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2345510 
End bp2346880 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content68% 
IMG OID644792782 
ProductHflK protein 
Protein accessionYP_002944095 
Protein GI239815185 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCAACC TGAACGATGG CCGATGGGGC CGTGGCGACG AGCCGTCGTC CAACGGCGAC 
CGCCCAACCG GCAACCGGCC TCCCGACGCG GACCCGCCGG GCGGCCCGAC GCCACCGCCC
TCGGGCAACA ACAACGGCAA CGGCAACCGC CCCCGCGGCC AGGGCCCGAA CCAGGGCCCG
CCCGACCTCG ATGAACTCTG GCGCGACCTC AACCGCAAGC TGGGCGGCTT CTTCGGCGGC
AAGGGCGGCG GCAATCGCCC CACGGGCGGC GGCAATGGCG GTGGCGGCAA CGGCTATCGG
CCGGACATGA AGAATGCCGG CTTCGGCCTC GGACTGGTGG CGGCGGTGGC CGTCCTCATC
TGGCTCGGGA CCGGCTTCTT CATCGTGAAC GAAGGCCAGC AGGCCGTGGT GACCCAGTTC
GGCCGCTACA AGTCGACGGT CAATGCCGGC TTCAACTGGC GCCTGCCGTA TCCCATCCAG
CGCCACGAGG TGGTGGTGGT CACGCAGATC CGCTCGACCG ACGTGGGCCG CGACGCCATC
GTGCGCTCCA CCGGCCTGCG CGAATCGGCC ATGCTGACCG AAGACGAGAA CATCGTCGAA
ATCAAGTTCG CCGTGCAGTA CCGCCTGAGC AATGCGCAGG CCTGGCTCTA CGAGAGCAAG
TCGCCGGCCG AAACCATCGT GCAGGTGGCC GAGAGCTCCG TGCGCGAGGT GGTCGGCAAG
ATGAAGATGG ATGCCGCGCT GGCCGAGGAG CGCGACCAGA TCGCCCCGCG CGTGCGGCAA
TTGATGCAAA CCATCCTCGA CCGCTACAAG ATCGGTGTCG AAGTGGTCGG CATCAACCTG
CAGCAGGGAG GAGTGCGTCC CCCCGAGCAG GTGCAGGCCG CGTTCGACGA CGTGCTCAAG
GCCGGCCAGG AGCGCGAGCG CACCAAGAAC GATGCGCAGG CCTATGCCAA CCAGGTCGTG
CCGCTTGCCG CCGGTACGTC CTCGCGGCTC AAGGAAGAGT CCGAAGCCTA CAAGGCGCGC
ATCGTCGCAC AGGCACAGGG CGATGCCGGC CGCTTCAGCG CGGTGCTGGC CGAGTACCAG
AAGGCGCCGC AGGTGACGCG CGACCGCATG TACACCGACG CCATGCAGCA GATCTATGCC
AGCACCACCA AGGTGCTGGT CGATACCAAG CAAGGCTCCA ACCTGCTGTA CCTGCCGCTG
GACAAGCTCA TGCAGCTGAG CGGCAGCAAC CCGGCCGCAA CGCCGGTCGA TGCGGCCAGC
CCCAGCGTGG CGGGTACCGC GCCCGCCCAG TCGTCGGTGA TTCCGGTGGT GCCGCCATCG
AGCGAGAGCC GTGCCCGCGA TGGCCGTTCG CGTGATCGCG ACGTGCGTTG A
 
Protein sequence
MFNLNDGRWG RGDEPSSNGD RPTGNRPPDA DPPGGPTPPP SGNNNGNGNR PRGQGPNQGP 
PDLDELWRDL NRKLGGFFGG KGGGNRPTGG GNGGGGNGYR PDMKNAGFGL GLVAAVAVLI
WLGTGFFIVN EGQQAVVTQF GRYKSTVNAG FNWRLPYPIQ RHEVVVVTQI RSTDVGRDAI
VRSTGLRESA MLTEDENIVE IKFAVQYRLS NAQAWLYESK SPAETIVQVA ESSVREVVGK
MKMDAALAEE RDQIAPRVRQ LMQTILDRYK IGVEVVGINL QQGGVRPPEQ VQAAFDDVLK
AGQERERTKN DAQAYANQVV PLAAGTSSRL KEESEAYKAR IVAQAQGDAG RFSAVLAEYQ
KAPQVTRDRM YTDAMQQIYA STTKVLVDTK QGSNLLYLPL DKLMQLSGSN PAATPVDAAS
PSVAGTAPAQ SSVIPVVPPS SESRARDGRS RDRDVR