| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2187 |
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| Symbol | ispG |
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| ID | 7973874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2337948 |
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| End bp | 2339228 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792775 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_002944088 |
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| Protein GI | 239815178 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGACT GCACTCCCCA ACCCATCGAA TCGGCGGCGC CCAAGGCGCG CCGTTCGCGC
CAGGCCCAGG TGGTCTGGGG GCCACGCACC GTGACGGTGG GCGGCGATGC GCCCGTGCGG
GTGCAGTCCA TGACCAACAC CGACACCGTC GATGCCGTCG GCACGGCCAT CCAGGTGAAG
GAGCTTGCCA TTGCCGGCTC GGAGATGGTG CGCATCACCG TCAACACGCC GGAGGCGGCG
GCCCAGGTGC CGTACATCCG CGAACAGCTC GACCGCATGG GCATCGACGT GCCGCTGATC
GGCGACTTCC ACTACAACGG CCACCGCCTG CTCACCGACT ATCCGGCCTG CGCCGAGGCG
CTGAGCAAGT ACCGCATCAA TCCAGGCAAC GTGGGCAAGG GCGACAAGCG CGACCGCCAG
TTCGGCCAGA TGATCGATGC AGCCATGCGC TGGAACAAGC CGGTGCGCAT CGGTGTCAAC
TGGGGCAGCC TCGACCAGGA ACTGCTGGCC AGCCTGATGG ACACCAACAG CCAGCGCGCC
GAGCCCTGGG ACGCGAAGCA GGTGATGTAC GAGGCGCTCA TCACCTCGGC CATCGAATCC
GCCAAGCTCG CCGAATCGAT GGGCATGGCC GGCAACCAGG TCATCCTGTC GTGCAAGGTG
AGCGGCGTGC AGGACCTGAT CTCGGTCTAC CGCGAACTCG CCAGGCGCTG CGACTACCCG
CTGCACCTGG GGCTCACCGA AGCCGGCATG GGCACCAAGG GCACGGTGGC GTCGGCCACG
GCGCTTTCCA TCCTGCTGCA GGAGGGCATC GGCGACACCA TCCGCGTGTC GCTCACGCCG
CAGCCGGGCG AGTCGCGCAC GCAGGAAGTG CTGATCGCCA ACGAGATCCT GCAGGCGCTG
GGCCTGCGCG TTTTCGTGCC GAGCGTCACC GCCTGCCCGG GCTGCGGCCG CACCACCAGC
ACCACCTTCC AGGAGCTGGC CAAGCAGATC GACGACTACC TGCGCCTGCA GATGCCGGTC
TGGCGCAAGA AGTACCCGGG CGTCGAGACG CTGAAGGTGG CCGTGATGGG CTGCATCGTC
AACGGCCCCG GCGAGAGCAA GCACGCCGAC ATCGGCATCA GCCTGCCCGG CACCGGCGAG
GCGCCCGCCG CCCCGGTCTT CATCGACGGC GAAAAGGCAC TCACGCTGCG CGGCGACAAT
ATCGCCAACG AGTTTCACCA GCTCGTCGAA AACTACATTC AAAAGCGCTT CGGCCAGCAA
CTGGCTGCCG ACGTCGCCTG A
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| Protein sequence | MTDCTPQPIE SAAPKARRSR QAQVVWGPRT VTVGGDAPVR VQSMTNTDTV DAVGTAIQVK
ELAIAGSEMV RITVNTPEAA AQVPYIREQL DRMGIDVPLI GDFHYNGHRL LTDYPACAEA
LSKYRINPGN VGKGDKRDRQ FGQMIDAAMR WNKPVRIGVN WGSLDQELLA SLMDTNSQRA
EPWDAKQVMY EALITSAIES AKLAESMGMA GNQVILSCKV SGVQDLISVY RELARRCDYP
LHLGLTEAGM GTKGTVASAT ALSILLQEGI GDTIRVSLTP QPGESRTQEV LIANEILQAL
GLRVFVPSVT ACPGCGRTTS TTFQELAKQI DDYLRLQMPV WRKKYPGVET LKVAVMGCIV
NGPGESKHAD IGISLPGTGE APAAPVFIDG EKALTLRGDN IANEFHQLVE NYIQKRFGQQ
LAADVA
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