Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2182 |
Symbol | |
ID | 7973869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2332567 |
End bp | 2334381 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644792770 |
Product | pseudouridine synthase |
Protein accession | YP_002944083 |
Protein GI | 239815173 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCTCCT CCGACATCGA CGACGCGGCA ATCGTGCCGG CCCAGCCCGA ATCCAAGAAA AAGAAGGCGA AAGCGGCCGT GTCCGGCCCG TCTGCCGAAG CCGAAGCGGG CGTGCCCGCG GCGGCCGCGG CCGGGGGCGA GGCGCCGAAG AAGCCGCGCG CCCCACGCCG CAAGAAGGTG GTGGAGCCGG CGGCCGGGGA GGGCGAGCCC GCAGCAGCAC CTGCCGCACC CGCCGCGGCA GCTGAAGCTT CCGAACCCGT GGCCCAGGTG GCCGATGCAG CGCCCGCCGC CGCACCAGTC GCCGACGAAC CCGCCGCCGC CGCTGCGCCA GCCACATCCG TCGAACGCGC CGAAGAGAAT GCGCGCGCTT CCTCCTACGA CGATGAAGAA GAGGATGAAG AGGAAGAAGA GCCCGACGAG GAAGAGGACG ATCTCGACCG CGCACGCCGC GCCGCCGAGC GCGAGCAGCG CAACGCACCG CCGCCCGAGC CGATCCGCTT CGCCGACGTC ATCTCGGGCC AGTTCGATGC CGACGAAGAG AGCCCCGAAG TCCCGCCCCT CAAGCGCGTG CTGCTGCCCG AGGCCGACTC GCCCAAGCTG CACAAGGTGC TGGCGCAGGC GGGCCTGGGC TCGCGGCTCG AAATGGAAGC GCTCATTCTG CAGGGCCGCA TCTCGGTGAA CAACGAGCCG GCCCACATCG GCCAGCGCAT CCAGTATGGC GACCAGGTCA AGATCAACGG CAAGCCGATC CGCTACCGCA TCGCGCCGCC GCCGCCGCGC GTGATCGCCT ACCACAAGCC GGTGGGCGAG GTCGTGACGC ACGACGATCC GCAGAACCGG CCCACGGTGT TCCGCAAGCT GCCGCGCCTG CAGCAGGGCA AGTGGCAATC GGTCGGCCGG CTCGACCTGA ACACCGAGGG CCTGCTGCTG TTCAGCAGCT CCGGCGACCT GGCCAACCAG CTGATGCATC CGCGCTTCGG CCTGGAGCGC GAATACGCCG TGCGCGTGCT CGGCGCGCTC AATGCCGAGG AAAAGAAGAA GCTGCTCGAA GGCGTTCGCC TCGACGACGG CATGGCCCAG TTCGGCACCA TCGAGGAGGG CGGCGGCGAG GGCTCCAACC ACTGGTACCG CGTCACCATC TCCGAAGGCC GCAACCGCGA AGTGCGGCGC CTGTTCGAAT CGGTGGGCCA TGCGGTCAGC CGGCTGATCC GCATCCGCTA CGGCGCCATG GTGCTGCCGC GCGGCTTGAA GCGCGGCGCC TGGATGGAGC TCGACGAGCG CGACATCAGC GCGCTGTTCC AGGCCTCGGG CGGCGGCGCG CCGCGTCCGC CGCAGCAGCA GCGCGGGCCG GGCCAGGAAG GTGCCGGCGG CGGTCGCAAC GGACGCAACA AGAAGCGGCG CGGCAATCGC AACGCCGGCG GCGGACAGCA GCAGCCGCGC GACATGCGCG ACGACGGCCG CGAGGCGCCC ATTCCCAATC CGCTCGGCGA CGGCCGCCCG CCGCGCGGCG AGCGCGGCGG GCGTGGCAAC CGCGGCGGTG GCGGTGGCGG CGGCAACGCC GGCATGCCGC CGCAGGGGCG CCGCGGCAAC AGCAACAACA ACCGCGGCAA CCGCCAGGGC GAGGAGCGTC CGCCGAGCGG CGCGAACCAG CCCGACCCGA TGAAGACCTC GCTCGGCTAC ATCGGCGCCG ACAGCTTCTC GCGCCAGCGC AAGGAGCAGC GGCAGGGTCC GGGGCGCCGC GGCGGCGGCC CGGGTGGCGG CGGTGGCTTC GGTGGCCAGG GCGGCCCCGG CGGAAACCGG CGCCGCGGGC GCTGA
|
Protein sequence | MSSSDIDDAA IVPAQPESKK KKAKAAVSGP SAEAEAGVPA AAAAGGEAPK KPRAPRRKKV VEPAAGEGEP AAAPAAPAAA AEASEPVAQV ADAAPAAAPV ADEPAAAAAP ATSVERAEEN ARASSYDDEE EDEEEEEPDE EEDDLDRARR AAEREQRNAP PPEPIRFADV ISGQFDADEE SPEVPPLKRV LLPEADSPKL HKVLAQAGLG SRLEMEALIL QGRISVNNEP AHIGQRIQYG DQVKINGKPI RYRIAPPPPR VIAYHKPVGE VVTHDDPQNR PTVFRKLPRL QQGKWQSVGR LDLNTEGLLL FSSSGDLANQ LMHPRFGLER EYAVRVLGAL NAEEKKKLLE GVRLDDGMAQ FGTIEEGGGE GSNHWYRVTI SEGRNREVRR LFESVGHAVS RLIRIRYGAM VLPRGLKRGA WMELDERDIS ALFQASGGGA PRPPQQQRGP GQEGAGGGRN GRNKKRRGNR NAGGGQQQPR DMRDDGREAP IPNPLGDGRP PRGERGGRGN RGGGGGGGNA GMPPQGRRGN SNNNRGNRQG EERPPSGANQ PDPMKTSLGY IGADSFSRQR KEQRQGPGRR GGGPGGGGGF GGQGGPGGNR RRGR
|
| |