| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2179 |
|---|
| Symbol | |
|---|
| ID | 7973866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2329751 |
|---|
| End bp | 2330557 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792767 |
|---|
| Product | outer membrane assembly lipoprotein YfiO |
|---|
| Protein accession | YP_002944080 |
|---|
| Protein GI | 239815170 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGCG CCAAATTATC GGTCCCCTCC TGGATCGCCC TCAGCGCGGC AGCGCTGCTT
GCAGCCGGCT GCTCCTCCAC CTCCGTCGAC AAGACCGCCA ACTGGAGCCC CAACCGCATC
TACGCCGAGG CCAAGGACGA AGTGGGCTCC GGCGCCTACG ACAAGGCCGT GCCGCTCTAC
GAGAAGCTCG AAGGCCGCGC CGCCGGCACG CCGCTCGCGC AGCAGGCCCA GCTCGAGAAG
GCCTACGCCC AGTACAAGTC CGGCGAGAAG GCCAATGCCA TTGCCACCAT CGACCGCTTC
CTGAAGCTGC ATCCGGCCAG CCCGGCGATC GACTACGCGC TCTACCTCAA GGGCGTGATC
AACTTCAACG ACGACCTCGG CATGTTCGCG TTCCTGACGC GCCAGGACCT GTCCGAGCGC
GACCAGAAGG CCGCCAAGGA ATCGTTCGAG TCGTTCAAGG AACTGGCAAC GCGCTTCCCC
GAGTCGCGCT ACGCGCCCGA CGCGCGCCAG CGCATGAACT ACATCGTGAA CTCGCTCGCG
CAGTACGAAG TGCACGTGGC GCGCTACTAC TACTCGCGCG GCGCCTATCT GGCGGCCATC
AACCGCGCGC AGCTCGCGCT GTCCGACTAC CGCGAAGTGC CCGCGCTCGA AGAAGCCCTG
TACATCATCG TGCGCTCCTA CGATGCGCTC GGCATGAAGG ACCTGCGCGA CGACGCCCAG
CGCGTGCTGA CCACCAACTA TCCGCACAGC GAGTACCTCG CGCGCGGCTT CAAGGGCAAG
GACGATCCGT GGTGGAAGGT CTGGTAA
|
|---|
| Protein sequence | MFRAKLSVPS WIALSAAALL AAGCSSTSVD KTANWSPNRI YAEAKDEVGS GAYDKAVPLY
EKLEGRAAGT PLAQQAQLEK AYAQYKSGEK ANAIATIDRF LKLHPASPAI DYALYLKGVI
NFNDDLGMFA FLTRQDLSER DQKAAKESFE SFKELATRFP ESRYAPDARQ RMNYIVNSLA
QYEVHVARYY YSRGAYLAAI NRAQLALSDY REVPALEEAL YIIVRSYDAL GMKDLRDDAQ
RVLTTNYPHS EYLARGFKGK DDPWWKVW
|
|---|
| |