Gene Vapar_2178 details

Gene Information

• Locus tag: Vapar_2178
• ID: 7973865
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2327642
• End bp: 2329699
• Gene Length: 2058 bp
• Protein Length: 685 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644792766
• Product: helicase c2
• Protein accession: YP_002944079
• Protein GI: 239815169
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGAAA CACTCGAGGA CAAGGTGCGC GACGCCTTCG CGCAGGGCGG CGTCCTGTCG 
CGTGCGGCAG AGCAGTTCCG CGAGCGCTCG GGGCAGACCG AAATGGCGCT GGCCGTCGCC 
CGCACCATCG AGGACGGCGG CGTGCTGGTG GTCGAGGCCG GCACCGGCGT GGGCAAGACT 
TTCTCGTATC TCGTGCCGGC GTTGCTGAGC GGCGAGCGCG TGCTGCTGTC GACCGCCACC 
AAGACCCTGC AGGACCAGTT GTTCGGCCGC GACCTGCCGC GGCTGGTCGA GGCGCTCGAG 
CTGCCGGTGC GCACGGCGCT GCTCAAGGGG CGCGCGAGCT ACCTGTGCCT GCACCGGCTC 
GACCTCGCGC GCCACGATGC GTCGCTTCCC GAACGCGGCA GCCTGCGCAC GCTCGCCAAG 
ATCGAGCAGT GGTCCAAGGC CACGCGAACC GGCGACCTGG CCGAGCTGCC CGGGCTGGAC 
GAGCGCTCGC CGCTCATCCC GCTCATCACT TCCACGCGCG AGAACTGCCT GGGCGCGCAG 
TGCCCGCAGT TCAAGCCCTG CCACGTCAAC CTGGCGCGGC GCGAGGCGCT GGCGGCCGAT 
GTGGTGGTCA TCAACCATCA CCTGTTTTTC GCCGACCTCG CGGTGCGCGA GACCGGCATG 
GCGGAACTGC TGCCGACCGT GAGCGTGGTG GTGTTCGACG AGGCCCACCA GCTCAACGAA 
ACCGGCGTGC AGTTCCTGGG TGCGCAGCTC GGCAGCGGGC AGGCCCTGGA CTTTGCGCGC 
GACCTGCTCG GAGCCGGCTT GCAGCATGCG CGCGGGCTGG TCGACTGGCA GCAGCTGGTG 
GCGGCCGTCG AACGCGCCGC GCGCGAGCTG CGCCTTGCGG TCGGCAAGCA GTGGCCCGGC 
ACCAAGCTGC GCTGGGTGGG CCCGTCGCCG GAAGGCATCG ACGCGCAGGC CTGGCAGGAC 
GCGCTCGAAG CCCTGCAGCA CGCCTTTGAA ATGGCTGCCG AAGGGCTCGA TACCGTCAGC 
GAGATATCGC CCGATTTCGT GCGCCTGTAT GAGCGGGCGC AGCAGCTCGC CAAGCGCGCG 
GCACGCTTCG CGCTGCCCTG CGAAACCGAC TCGGTGCGCT GGGTCGACGT GGGCACGCAG 
CTGCGGCTGG TCGAATCGCC GCTCGACATT GCCGAGGCCA TGCGCACGCG CGTGCTCAAG 
ATCGGCAGCG GCGCGGCCCC CGACGACGGC GATGAACACG AAGCCCGCGC GGCGCCCGAA 
GACAGCGGAC GCGCCTGGGT CTTCACCTCC GCCACGCTGG GCGACGAGCC CACGCTGCGC 
TGGTTCACCG AGCCGTGCGG CCTGGGCGAC GCCGAGGTGC TGCGGGTGCA GAGCCCCTTC 
GACTATGCCG CGCAGGCCGG GCTCTATGTG CCGCGTGCCT TTCCCAAGCC CAACGACGCC 
GCCCACAGCG CGCGCGTGGC GCAGCTGGCC GCACGCGGCG CCGCCGAGCT CGGCGGCCGG 
ACCCTGGTGC TGACCACCAC GCTGCGCGCG CTGCGCGCCA TCGGTGACGA GATGAAGCAG 
CAGTTCGAAC GGCTCGAGGC CGACGTGCGG CCCGAGGTGC TGGTGCAGGG CGAGCTGCCC 
AAGCGCGTGC TCATGGACCG CTTCCGCGAA GGCGCGGAGG GCGGGCGCGT CGGCTGCGTG 
CTGGTGGCGT CGGCATCGTT CTGGGAAGGC TTTGATGCGC CCGGCGATGC ATTGCAGCTG 
GTGGTGATCG ACAAGCTGCC GTTCCCTCCG CCCAATGATC CGCTGGTCGA GGCGCGCTCG 
CAGCGCCTCG AAGCCCAGGG CCGTAGCTCG TTCAGCGACT ATTCGCTGCC CGAGGCGGCC 
GTGGCGCTCA AGCAGGGAGC GGGGCGGCTG ATCCGCCGCG AAACCGACTG CGGCGTGCTT 
GCCATTTGCG ACACCCGCCT GGTCGCCATG GGCTATGGCC GGCGGCTCCT GGCCGCGCTG 
CCGCCGATGC GCAGGCTGGA AAGCGAAGCG GACTTCGAGG CGGCGATCGG CGAACTCAGG 
AACTCGCTCT CGGCCTGA 

 

Protein sequence

MSETLEDKVR DAFAQGGVLS RAAEQFRERS GQTEMALAVA RTIEDGGVLV VEAGTGVGKT 
FSYLVPALLS GERVLLSTAT KTLQDQLFGR DLPRLVEALE LPVRTALLKG RASYLCLHRL 
DLARHDASLP ERGSLRTLAK IEQWSKATRT GDLAELPGLD ERSPLIPLIT STRENCLGAQ 
CPQFKPCHVN LARREALAAD VVVINHHLFF ADLAVRETGM AELLPTVSVV VFDEAHQLNE 
TGVQFLGAQL GSGQALDFAR DLLGAGLQHA RGLVDWQQLV AAVERAAREL RLAVGKQWPG 
TKLRWVGPSP EGIDAQAWQD ALEALQHAFE MAAEGLDTVS EISPDFVRLY ERAQQLAKRA 
ARFALPCETD SVRWVDVGTQ LRLVESPLDI AEAMRTRVLK IGSGAAPDDG DEHEARAAPE 
DSGRAWVFTS ATLGDEPTLR WFTEPCGLGD AEVLRVQSPF DYAAQAGLYV PRAFPKPNDA 
AHSARVAQLA ARGAAELGGR TLVLTTTLRA LRAIGDEMKQ QFERLEADVR PEVLVQGELP 
KRVLMDRFRE GAEGGRVGCV LVASASFWEG FDAPGDALQL VVIDKLPFPP PNDPLVEARS 
QRLEAQGRSS FSDYSLPEAA VALKQGAGRL IRRETDCGVL AICDTRLVAM GYGRRLLAAL 
PPMRRLESEA DFEAAIGELR NSLSA