| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2171 |
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| Symbol | sucA |
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| ID | 7973858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2319122 |
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| End bp | 2321998 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792759 |
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| Product | 2-oxoglutarate dehydrogenase E1 component |
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| Protein accession | YP_002944072 |
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| Protein GI | 239815162 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
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| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0853534 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATT CCTCCAAGCC CACGGCGTAT GCCGCGTACC AGGGCAACAC GTACCTCTTC
GGTGGCAATG CGCCCTATGT CGAAGAGATG TACGAAAACT ACCTCTCCAA TCCCGGCAGC
GTGCCTGACA ACTGGCGTTC GTATTTCGAC GCCCTGCAGA ACGTGCCCGC AGCCGATGGC
TCCAACACCA GGGACGTCCC GCACCAGCCG GTGATCAACG CGTTTGCCGA ACGCGCGAAG
CAGGGCACCA CCAAGGTCGT GCAGGCCAGC GGCGCGGATT CCGAGCTCGG CCGCAAGCGC
ACCGCCGTCC AGCAGCTGAT TGCGGCTTAT CGCAATGTCG GCGCCCGCTG GGCCGACCTG
GACCCCCTCA AGCGCGCCGA GCGCCCGGCC ATTCCGGAAC TCGAACCCTC GTTCTACGGC
TTCACCGATG CCGACCTCGA GACGGTGTTC AACACCAGCA ACACCTTCTT CGGCAAGGAG
ACCATGTCGC TGCGCGACCT GCTCAATGCC TTGCGCGAAA CGTACTGCGG CACCATCGGC
GCCGAGTACA TGTACACCAC CGACCAGAAC CACAAGCGCT GGTGGCAGCA GAAGCTCGAA
AGCGCCCGCA CTAACCCGCA GCTCAATGCG GACCAGAAGA AGCACGTGCT CAACCGCCTG
ACCGCGGCCG AAGGCCTCGA GCGCTTCCTG CACACCAAGT ACGTCGGCCA GAAGCGCTTC
TCGCTCGAAG GCGGCGAAAG CTTCATCGTC TCGATGGACG AGCTGATCAA CCAGGCCGGC
ATCAAGGGCG TGCAGGAAAT CGTGATCGGC ATGGCCCACC GCGGCCGCCT CAACGTGCTG
GTCAATTCGC TCGGCAAGAT GCCGGCCGAC CTGTTCGCTG AGTTCGACCA CACCGCGCCT
GAAGACCTGC CGAGCGGCGA CGTCAAATAC CACCAGGGCT TCAGCTCGGA CGTGACCACG
CCCGGCGGCC CGGTGCACCT GAGCCTGGCA TTCAATCCCT CGCACCTCGA GATCGTGAAC
CCGGTGGTCG AAGGCTCGGT GCGCGCCCGC ATGGACCGCC GCGCCGACCC GCAGGGCAAG
CAGGTGCTGC CCGTGCTGGT GCACGGCGAC GCCGCCTTCG CGGGCCAGGG CGTCGTGATG
GAAACGCTGG CGCTGGCCGA AACCCGTGGC TACTTCACGG GCGGCACGGT GCACATCGTC
ATCAACAACC AGATCGGCTT CACCACCAGC GACCCGCGCG ACAGCCGCTC GACGCTGTAC
TGCTCGGACA TCGTCAAGAT GATCGAAGCA CCGGTGCTGC ACGTGAACGG CGACGATCCC
GAAGCCGTGG TGCTCGCCAC CCAGCTCGCC CTCGAATTCC GCATGGAGTT CCAGAAGGAC
GTAGTGGTCG ACATCATCTG CTTCCGCAAG CTGGGCCACA ACGAGCAGGA CACCCCCTCG
CTCACGCAGC CGCTCATGTA CAAGAAGATC GCCCAGCACC CCGGCACGCG CAAGCTGTAC
GCCGACAAGC TGGCGACGCA GGGCCTGGGC GCCACGCTCG GCGACGACAT GGTCAAGGCC
CAGCGCGCCG CCTTCGACGA AGGCCGCAAC ACGGTCGACC CGGTGCTCAC GAACTTCAAG
AGCAAGTACG CCGTCGACTG GAATCCCTAC CTCAACAAGA AGTGGACCGA CGCCGGCGAC
ACCGCCATTC CGTCCAGCGA GTGGAAGCGC CTGGCCGAGA AGATCACCAC GGTGCCGGCC
GGCTTCACGG TGCACCCGCT CGTGAAGAAG GTGCTGGACG ACCGCGCCGC CATGGGCCGC
GGCGACGTCA ACGTCGACTG GGGCATGGGC GAGCACATGG CCTTTGCGTC GCTGGTGGCC
AGCGGCTACC CGGTGCGCCT GTCGGGCGAA GACTCGGGCC GCGGCACGTT CACGCACCGC
CACGCCGTGC TGCACGACCA GAACCGCGAG AAGTTCGACG AAGGCACCTA CACGCCGCTG
CAGAACGTGG CCGAGAACCA GGCACCGTTC GTCGTCATCG ACTCGATCCT GTCGGAAGAA
GCGGTGCTCG CGTTCGAATA CGGCTATGCC TCGAACGACC CGAACACGCT CGTGATCTGG
GAAGCCCAGT TCGGCGACTT CGTGAACGGT GCGCAAGTGG TGATCGACCA GTTCATCGCC
TCGGGCGAAG TGAAGTGGGG CCGCGTCAAC GGCCTCACGA TGATGCTGCC GCACGGCTAC
GAAGGCCAGG GCCCCGAGCA CAGCTCGGCC CGCCTGGAGC GCTTCATGCA GCTGAGCGCC
GACACCAACA TGCAGGTGGT GCAGCCCACC ACGGCCAGCC AGATCTTCCA CGTGCTGCGC
CGCCAGATGG TGCGCAACCT GCGCAAGCCT TTGATCATCA TGACGCCGAA GTCGCTGCTG
CGTAACAAGG ACGCGACCTC GCCGCTGTCC GAGTTCACCA AGGGCGGCTT CCAGACGGTC
ATCCCCGACA GCAAGGGCCT GAAGGCCGAG AAGGTCAAGC GCCTGATCGC CTGCTCGGGC
AAGGTCTACT ACGACCTGGC CAAGAAGCGC GAAGAGCAGG GCACCGACGA CGTGGCGATC
ATCCGCGTCG AGCAGCTCTA TCCGTTCCCG CACAAGGCCT TCGCGGCCGA GATCAAGAAG
TACCCGAACC TCGCCGACGT GGTGTGGTGC CAGGACGAGC CGCAGAACCA GGGCGCCTGG
TTCTTCGTGC AGCACTACAT CCACGAGAAC ATGCAGGAAG GCCAGAAGCT CGGCTACTCC
GGCCGTGCCG CTTCGGCATC GCCTGCAGTC GGCTACTCGC ACCTGCACCA GGAACAGCAG
AAGGCGCTGG TCGATGGCGC ATTTGGCAAG CTCAAGGGCT TCGTGCTGAC CAAGTAA
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| Protein sequence | MSDSSKPTAY AAYQGNTYLF GGNAPYVEEM YENYLSNPGS VPDNWRSYFD ALQNVPAADG
SNTRDVPHQP VINAFAERAK QGTTKVVQAS GADSELGRKR TAVQQLIAAY RNVGARWADL
DPLKRAERPA IPELEPSFYG FTDADLETVF NTSNTFFGKE TMSLRDLLNA LRETYCGTIG
AEYMYTTDQN HKRWWQQKLE SARTNPQLNA DQKKHVLNRL TAAEGLERFL HTKYVGQKRF
SLEGGESFIV SMDELINQAG IKGVQEIVIG MAHRGRLNVL VNSLGKMPAD LFAEFDHTAP
EDLPSGDVKY HQGFSSDVTT PGGPVHLSLA FNPSHLEIVN PVVEGSVRAR MDRRADPQGK
QVLPVLVHGD AAFAGQGVVM ETLALAETRG YFTGGTVHIV INNQIGFTTS DPRDSRSTLY
CSDIVKMIEA PVLHVNGDDP EAVVLATQLA LEFRMEFQKD VVVDIICFRK LGHNEQDTPS
LTQPLMYKKI AQHPGTRKLY ADKLATQGLG ATLGDDMVKA QRAAFDEGRN TVDPVLTNFK
SKYAVDWNPY LNKKWTDAGD TAIPSSEWKR LAEKITTVPA GFTVHPLVKK VLDDRAAMGR
GDVNVDWGMG EHMAFASLVA SGYPVRLSGE DSGRGTFTHR HAVLHDQNRE KFDEGTYTPL
QNVAENQAPF VVIDSILSEE AVLAFEYGYA SNDPNTLVIW EAQFGDFVNG AQVVIDQFIA
SGEVKWGRVN GLTMMLPHGY EGQGPEHSSA RLERFMQLSA DTNMQVVQPT TASQIFHVLR
RQMVRNLRKP LIIMTPKSLL RNKDATSPLS EFTKGGFQTV IPDSKGLKAE KVKRLIACSG
KVYYDLAKKR EEQGTDDVAI IRVEQLYPFP HKAFAAEIKK YPNLADVVWC QDEPQNQGAW
FFVQHYIHEN MQEGQKLGYS GRAASASPAV GYSHLHQEQQ KALVDGAFGK LKGFVLTK
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