Gene Vapar_2169 details

Gene Information

• Locus tag: Vapar_2169
• ID: 7973856
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2316290
• End bp: 2316892
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644792757
• Product: isochorismatase hydrolase
• Protein accession: YP_002944070
• Protein GI: 239815160
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.230089
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGCTCG ATGCCTCGCT TTCCCAACTC GTCCTGGTCG ACTACCAGGC GCGGCTGATG 
CCGTCGATCT TCGAGGGCGA AGCGGTCGCG CAGAACGCGG TGCGGCTCGG CAAGATGGCC 
CAGCTGCTCC AGGTGCCGGT GTGGGGCACC GAGCACAACC CGTCCAAGCT CGGCGAGAAC 
CTGCCCGACA TTCGCGCGCT GTGCCAGCGC ACCCTGTCGA AGATGCACTT CAGCGGTGTG 
GAAGAGGGGC TCGGCGAATG GCTGCGCGTG CCGGCAAAGG CGCCGCAGGG CAATGCCCGC 
AGCCTGCCCA AGCACCTGCA GAAGCCCGCT GCGGCCGCCG AAGAGCGCAA TTCCATCGTG 
ATCGCCGGCT GCGAAGCCCA TGTCTGCCTG CTGCAGACCG CGCTCGACCT GCTGGAAGAC 
GAGTTCGAGG TCTGGGTCGT CACCGACGCC TGCAGCTCGC GCACCGAGCG CAACCGCGAC 
GCCGCCTTCG ACCGGCTGGC CGGCGCAGGG GCCGAGCTCG TGACGACCGA GATGGTCGGC 
TTCGAATGGC TGCGCACCGC GGAGCACCCC GCGTTTTCCG AGCTGCTCAC CCTGGTCCGA 
TAG 

 

Protein sequence

MLLDASLSQL VLVDYQARLM PSIFEGEAVA QNAVRLGKMA QLLQVPVWGT EHNPSKLGEN 
LPDIRALCQR TLSKMHFSGV EEGLGEWLRV PAKAPQGNAR SLPKHLQKPA AAAEERNSIV 
IAGCEAHVCL LQTALDLLED EFEVWVVTDA CSSRTERNRD AAFDRLAGAG AELVTTEMVG 
FEWLRTAEHP AFSELLTLVR