Gene Vapar_2166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2166 
Symbol 
ID7973853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2313435 
End bp2314019 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content66% 
IMG OID644792754 
ProductNLP/P60 protein 
Protein accessionYP_002944067 
Protein GI239815157 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.343346 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTTTT TCGTCCTACC CGCGTCCCTC CTGTTTGCCG TCGCAGTCCA AGCCGCCCCC 
CAACAGGATC GAACCGATGA CGAACTGGCC CGGCTGCTGG CCGACAAGGG CATCATCGGC
CAACTCAGGC AGGTCCGCCA AACCGTCGCT GAACGAACCT CCGACCTGGT GGTGACCGCC
ATCGGCTTCC TCGGTGTTCC CTATCGCCGC GGCGGCAACT CGGCCGAATC CGGCTTCGAC
TGCAGCGGTT TCGTTCGCGC GATGTACAAC CAGACGCTCG GCCACGTGCT CCCGCGCCGC
GCCGAAGAAC AGGCCGCCGC CACCGAGAAG ATCGATCCCA GCCAGCTCAA GCCCGGCGAC
CTCGTCTTCT TCAACACCAT GCGCCGCGCC TTCAGCCATG TCGGCATCTA TGTGGGCGAA
GGCAAGTTCA TCCACTCGCC GCGCACCGGT GCCCAGGTCC GTGTGGAAGA CATGAACGGC
AGCTACTGGA GCCGCCGCTT CGACGGCGCA CGCCGCGTGC TCGGTGGCGC CCAGAACGAC
GAGATCAAGG CCGCGGCAAC TGCGGCAACC CACACCGGCA ACTGA
 
Protein sequence
MRFFVLPASL LFAVAVQAAP QQDRTDDELA RLLADKGIIG QLRQVRQTVA ERTSDLVVTA 
IGFLGVPYRR GGNSAESGFD CSGFVRAMYN QTLGHVLPRR AEEQAAATEK IDPSQLKPGD
LVFFNTMRRA FSHVGIYVGE GKFIHSPRTG AQVRVEDMNG SYWSRRFDGA RRVLGGAQND
EIKAAATAAT HTGN