| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2165 |
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| Symbol | |
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| ID | 7973852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2311514 |
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| End bp | 2313346 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792753 |
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| Product | dihydrolipoamide dehydrogenase |
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| Protein accession | YP_002944066 |
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| Protein GI | 239815156 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.327793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAC AACAAATCAA GGTGCCCGAC ATCGGCGACT TCGACGAAGT CGCGGTGATC
GAGGTGCTGG TCAATGTCGG CGACACGGTC AAGGCCGAGC AGTCGCTGAT CACGGTCGAA
TCGGACAAGG CCTCCATGGA GATTCCGTCG TCGGCGGCCG GCGTGGTGAA GGCGCTCGCC
GTCAAGGTGG GCGACAAGGT CAAGGAAGGC TCCGTGGTGC TGACGCTCGA GGTGGACGGT
GCCGCGGCGC CCGCACCCGC ACCGACGGCG GCCGCGCCTG CACCCGCCGC GGCGGCTCCC
GCACCCAAGG CTGCCGCTCC GGCCGCAGCC CCGGCAGCGG CGCCCGCGGC CTCCAGCTAC
GGCGGCAAGG TCGACGTCGA GTGCGACGTG ATCGTGCTCG GCGCCGGCCC CGGCGGCTAC
TCGGCGGCTT TCCGCGCGGC CGACCTGGGC CTCAAGGTCG TGCTGATCGA GCGCTACGCC
ACGCTCGGCG GCGTGTGCCT GAACGTCGGC TGCATTCCCT CGAAGGCGCT GCTGCACGTC
GCCTCGGTCA TGGACGAGGT GAAGCACTTC GCCGACCTCG GCGTGAGCTT TGCCGCGCCC
ACGGTCGACC GTGCCAAGCT GCTCGGCCAC AAGAACAAGG TGGTGGGCAA GCTCACCGGC
GGCCTCACGG CCATGGCCAA GATGCGCAAG GTGACGGTGC TGCGCGGCGT CGGCAACTTC
ATCGATCCGT ACCACCTGGA GGTGGAAGAA ACCTCGGGCA CCAGCTGGGA CACCACCGGC
AAGAAGCAGA CTGTCAAGTT CCGCAATGCG ATCATCGCGG CCGGTTCGCA GTCCGTGAGC
CTGCCGTTCA TGCCGAAGGA CCCGCGCGTG GTCGATTCCA CCGGCGCGCT CGAAATGGGC
ACCGACCCCA AGCGCATGCT GGTCCTGGGC GGCGGCATCA TCGGCCTCGA AATGGGCACG
GTGTATTCGA CGCTGGGCGC GCGCCTGGAC GTGGTCGAGA TGCTCGATGG CCTGATGCAG
GGTGCCGACC GCGACCTCGT GAAGGTCTGG CAGAAGATGA ACGCGCCGCG CTTCGACAAC
ATCATGCTCA AGACCAAGAC GGTGGGCGCC GAGGCCACGA AGGAGGGCAT CAAGGTGACC
TTCGAGGGCG AGCAGGCGCC CAAGGAGCCG CAGGTCTACG ACCTGGTGCT GCAGGCCGTG
GGCCGCAGCC CGAACGGCAA GAAGATCGGC GCCGAGAAGG CCGGCGTCGC GGTGAGCGAC
CGCGGCTTCA TTCCGGTCGA CATCCAGATG CGCACCAACG TCCCGCACAT CTTCGCCATT
GGCGACATCG TCGGCCAGCC GATGCTGGCG CACAAGGCGG TGCACGAGGC GCATGTGGCG
GCCGAGGTGA TTGCCGGCGA GCAAAAGGGC GACAAGGAGC TGTCGAGCGC CGCCTTCAAC
GCCCGCGTGA TCCCGAGCGT GGCCTACACC GACCCCGAGG TGGCGTGGGT GGGTCTCACC
GAAGACCAGG CCAAGGCCGA AGGCATCAAG ATCAAGAAGG GCCATTTCCC GTGGACTGCT
TCGGGCCGCG CCATCGCCAA CGGCCGCGAC GAAGGCTTCA CCAAGCTGCT GTTCGACGCC
CAGACGCACC GCATCCTGGG GGGCGGCATC GTCGGCACGC ATGCCGGCGA CATGATCGGG
GAGATTGCGC TGGCCATCGA GATGGGCGCC GACGAGATCG ACATCGGCAA GACCATCCAC
CCGCATCCGA CGCTGGGCGA AAGCATCGGC ATGGCGGCCG AGGTGGCGCA CGGGACCTGT
ACCGACCTGC CGCCGGCCAA GAAGGCGGCC TGA
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| Protein sequence | MSEQQIKVPD IGDFDEVAVI EVLVNVGDTV KAEQSLITVE SDKASMEIPS SAAGVVKALA
VKVGDKVKEG SVVLTLEVDG AAAPAPAPTA AAPAPAAAAP APKAAAPAAA PAAAPAASSY
GGKVDVECDV IVLGAGPGGY SAAFRAADLG LKVVLIERYA TLGGVCLNVG CIPSKALLHV
ASVMDEVKHF ADLGVSFAAP TVDRAKLLGH KNKVVGKLTG GLTAMAKMRK VTVLRGVGNF
IDPYHLEVEE TSGTSWDTTG KKQTVKFRNA IIAAGSQSVS LPFMPKDPRV VDSTGALEMG
TDPKRMLVLG GGIIGLEMGT VYSTLGARLD VVEMLDGLMQ GADRDLVKVW QKMNAPRFDN
IMLKTKTVGA EATKEGIKVT FEGEQAPKEP QVYDLVLQAV GRSPNGKKIG AEKAGVAVSD
RGFIPVDIQM RTNVPHIFAI GDIVGQPMLA HKAVHEAHVA AEVIAGEQKG DKELSSAAFN
ARVIPSVAYT DPEVAWVGLT EDQAKAEGIK IKKGHFPWTA SGRAIANGRD EGFTKLLFDA
QTHRILGGGI VGTHAGDMIG EIALAIEMGA DEIDIGKTIH PHPTLGESIG MAAEVAHGTC
TDLPPAKKAA
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