Gene Vapar_2158 details

Gene Information

• Locus tag: Vapar_2158
• ID: 7973845
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 2300119
• End bp: 2302176
• Gene Length: 2058 bp
• Protein Length: 685 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644792746
• Product: Oligopeptidase A
• Protein accession: YP_002944059
• Protein GI: 239815149
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0339] Zn-dependent oligopeptidases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCATGA CGAACAACCC CCTCCTCGAC TTCACCGATC TCCCGCTGTT CGACCGCATC 
AAGCCCGAAC ACGTTGCGCC CGCGGTCGAC ATCCTGCTGG CCGAAGCCGA GGCGGCGCTG 
CAGGCCGTGA CGGCGGCCGA CTTCCCCGCC GACTGGAATG CGATCTCCAA GGTGCTCGAC 
GTGGCCTCCG AGCGCTTCAG CCGCGCCTGG GGCGCCGTCG GCCATCTCAA CGCCGTGGCC 
GACACGCCGG AGCTGCGCGC CGCCTACAAC GAGGCCATGC CGCGCGTGAC CGCCTTCTGG 
ACCCGCCTGG GTTCCGACGA GCGCCTCTAT GCCAAGTACA AGGCCATCGA CGTGGCCACC 
CTCAACCCCG AGCAGCGCCA GGCGCACAAG AATGCCGTGC GCAACTTCGT GCTGGGCGGT 
GCGGAACTGC AGGGCGAGGC GAAAAAGCGC TTTGCCGACA TCCAGGAGCG CCAGGCCGAG 
TTGAGCCAGA AGTTCAGCGA GAACGCGCTC GATGCCACCG ACGCCTTCTC GTACTACGCG 
GCGCTGGGCG AGCTCGGGGG CGTGCCCGAA GACGTGGTGA GCGCGGCCCG CGCAGCAGCC 
GAAGCCGAAG GCAAGCAGGG CTACAAGCTC ACGCTCAAGA TGCCCTGCTA CCTGCCCGTG 
ATGCAGTTCG CCAGGAGCAG CGCGCTGCGC GAAACGCTCT ACCGCGCCTA CGTCACCCGC 
GCCAGCGAGC TCGGCGATCC GGCCTTCGAC AACACGGCCT TGATCAACGA GATCCTCGCG 
CTGCGCGAAG AAGAAGCAAA GCTGCTCGGC TACCGGAATT TCGGCGAGCT CTCGGTCGTG 
CCCAAGATGG CCGAGTCGCC CGAGCAGGTG ATCAAGTTCC TGCGCGATCT CGCGGCCAAG 
GCCAAGCCCT ACGGCGAACG CGACCTGGCC GACCTGCGCG CCTTTGCCGC GGAGCAGTTG 
GGCATCACCG ATCCGCAGGC CTGGGACTGG AGCTACATCG GCGAGAAGCT CAAGGAAGCG 
CGCTACGCCT TCAGCGAGCA GGAGGTCAAG CAGTACTTCC CGGCGCCCAA GGTGATGGCC 
GGCCTGTTCA AGATCGTCGA GACGCTGTTC GAGGTTTCGA TCCGCCGCGA CAGCGCGCCC 
ACCTGGCACC CGAGCGTCGA GGTCTACCGC ATCGAGCGGG CCGGGCAGAA GGTCGGCCAG 
TTCTACCTCG ATCCTTCCGC CCGTGCCGCC AAGCGCGGCG GCGCCTGGAT GGACGACGTG 
CGCGCGCGCT GGCTGCGCCC GGACGACGGC GTGCTGCAAA CGCCCGTCGC GCAGCTCGTG 
TGCAACTTTG CGAGCGGTGT CGATGGCAAG CCGCCGCTGC TCACGCACGA CGACGTGACC 
ACGCTGTTCC ATGAATTCGG CCACGGACTG CACCACATGC TCACGCAGGT GAACGAGCGC 
GACGTCTCGG GCATCAGCGG CGTCGAATGG GACGCGGTCG AGCTGCCGAG CCAGTTCATG 
GAGAACTTCT GCTGGGAGTG GGACGTGCTC AGGCACATGA CGGCCCACGT CGACACCGGC 
GAGCCGCTGC CGCGCGCGCT GTTCGACAAG ATGACCGCCG CCAAGAACTT CCAGAGCGGC 
CTGCAGACGC TGCGCCAGAT CGAGTTCTCG CTGTTCGACA TGCTGCTGCA CACCGAATAC 
CAGGCCGCCG CCGCGCAGCC GGGCGGCGTG CTCGCGCTGC TGGGCAAGGT GCGCGCCGAA 
GTGGCCGTGA TGCCCTCGCC TCCTTTCAGC CGCACGCCCA ACACCTTCAG CCACATCTTC 
TCGGGCGGCT ACGCGGCCGG CTACTACAGC TACAAATGGG CCGAGGTGCT GAGCGCCGAC 
GCCTATGCGG CCTTCGAGGA AACCGTGGGC GCCGACGGCC AGCCGAACAT CGAGACCGGC 
CGCAGGTACC GCCAGGCCAT CCTCGAAGCC GGCGGGAGCC GCAGCGCCAT GGATTCGTTC 
AAGGCCTTCC GCGGCCGCGA GCCCCAGCTT GATGCGCTGC TGCGACACCA GGGCATGGCG 
CAGACCCAGC CCGCTTGA 

 

Protein sequence

MAMTNNPLLD FTDLPLFDRI KPEHVAPAVD ILLAEAEAAL QAVTAADFPA DWNAISKVLD 
VASERFSRAW GAVGHLNAVA DTPELRAAYN EAMPRVTAFW TRLGSDERLY AKYKAIDVAT 
LNPEQRQAHK NAVRNFVLGG AELQGEAKKR FADIQERQAE LSQKFSENAL DATDAFSYYA 
ALGELGGVPE DVVSAARAAA EAEGKQGYKL TLKMPCYLPV MQFARSSALR ETLYRAYVTR 
ASELGDPAFD NTALINEILA LREEEAKLLG YRNFGELSVV PKMAESPEQV IKFLRDLAAK 
AKPYGERDLA DLRAFAAEQL GITDPQAWDW SYIGEKLKEA RYAFSEQEVK QYFPAPKVMA 
GLFKIVETLF EVSIRRDSAP TWHPSVEVYR IERAGQKVGQ FYLDPSARAA KRGGAWMDDV 
RARWLRPDDG VLQTPVAQLV CNFASGVDGK PPLLTHDDVT TLFHEFGHGL HHMLTQVNER 
DVSGISGVEW DAVELPSQFM ENFCWEWDVL RHMTAHVDTG EPLPRALFDK MTAAKNFQSG 
LQTLRQIEFS LFDMLLHTEY QAAAAQPGGV LALLGKVRAE VAVMPSPPFS RTPNTFSHIF 
SGGYAAGYYS YKWAEVLSAD AYAAFEETVG ADGQPNIETG RRYRQAILEA GGSRSAMDSF 
KAFRGREPQL DALLRHQGMA QTQPA