| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2150 |
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| Symbol | |
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| ID | 7973837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2294245 |
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| End bp | 2294847 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644792738 |
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| Product | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD |
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| Protein accession | YP_002944051 |
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| Protein GI | 239815141 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.375591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGACCA TCGACGCGAA CGGGATGCTC ATCGATCCCA GAGTGATCGC CAGACGCTCA
TCCGGCATCG AACACGGCGC CCTGCCCAAG GTGCTGGCCA TCGTCGTCCA TCAAACAGAC
TCATCGACCG CCGAGTCCAG TCTCAACAGC TACGGAGATG GTGGCAATGG CGCCCATTTC
CTCATCGACA AGAATGGCCA GATCTATCAA ACGGCCAGCC TGCACTCGCG CTGCTACCAC
GTCGGCAAAT TGATCAAGTC GAAGTGCCTG ACCGTCAACA AGAACACGTG CGACACGGCA
GCCATGGCCA AGATGCTGGC AATGTCGTGG ATTCAGCAGA TCAACGCACT GGATGCGCAT
GAACGCGCCA AGTCGTATCC GGACCGGTAC CCCGTCAACA GCGAGGCCAT CGGGATTGAA
CTCGTGGGAC TGCACATCGA CGAGAAGACC TATGAAGCGG TGACGGCTGC GCAGAACACG
TCGCTGCAAT GGCTCATCGA CGAGTTGTAT GCCCGGTTCA ACCTGAAGCC CGCCGATGTC
TACAGGCACC CGACGGTTTC ATACAAAAAT CCGGGTGAAG CGAGCTCGGC GATATGGAAA
TGA
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| Protein sequence | MSTIDANGML IDPRVIARRS SGIEHGALPK VLAIVVHQTD SSTAESSLNS YGDGGNGAHF
LIDKNGQIYQ TASLHSRCYH VGKLIKSKCL TVNKNTCDTA AMAKMLAMSW IQQINALDAH
ERAKSYPDRY PVNSEAIGIE LVGLHIDEKT YEAVTAAQNT SLQWLIDELY ARFNLKPADV
YRHPTVSYKN PGEASSAIWK
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