Gene Vapar_2146 details

Gene Information

• Locus tag: Vapar_2146
• Symbol: hscA
• ID: 7973832
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2290749
• End bp: 2292605
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644792733
• Product: chaperone protein HscA
• Protein accession: YP_002944047
• Protein GI: 239815137
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.843032
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCTTC TTCAAATTTC CGAACCCGGC CAGGCGCCCG ATCCGCATCA GCGCCGCATT 
GCCGTGGGCA TCGACCTGGG CACCACGCAT TCGCTGGTAG CAGCGGTGCG CAATGGCGTG 
GCCGAATGCC TGCCTGACGA CCAGGGCCGC GTGATCCTGC CTTCCGCCGT GCGCTATCTC 
GACCGCGAGC GGCGCCAGAT CGGCTTCGAC GCGCTCGCCG CGCGCGCGCA GGACGCCGCG 
AACACCATCA CCTCGGTCAA GCGCCTCATG GGCCGCGGGC TGGCCGACAT CGCCAACCGC 
GAGTCGATGT CGTACCGGCT GGTGGACGAG GGCGGCATGG TCAAGGTGGA GACGGCCGCC 
GGCATCAAGT CGCCGGTGGA GATCAGCGCC GAGATCCTGG CCACCTTGCG CTACCGCGCC 
GAAGACACCT TCGACGGCGA GCTCTACGGC GCCGTCATCA CCGTGCCGGC CTATTTCGAC 
GAAGGCCAGC GCCAGGCCAC CAAGGACGCC GCGCAGCTTG CCGGCCTCAA CGTGCTGCGC 
CTGATCAGCG AGCCCACGGC CGCGGCCATC GCCTACGGCC TGGACAACGC GAGCGAAGGC 
GTCTACGCCG TCTACGACCT GGGCGGCGGC ACCTTCGACA TCTCGATCCT GCGGCTCACG 
CAGGGCGTGT TCGAGGTCAT TGCCACGGGC GGCGACTCGG CCCTGGGCGG CGACGACTAC 
GACCACGCGC TCGCCGACTT CGTGCTCGCG CAAACCGGCC TGCAGGTGGG CAGCGACGCC 
GACAAGGCCG CCGTGCTGGT GGCTGCCCGT GCGGCCAAGG AGGCGCTGAC CGATGCCGAT 
TCCGTGGCGT TCCACGCCAA GCTTGCCGGC GGCGCCGCCC GTTTCGACCT GGCGCGCGCG 
CAATTCGACG CCGCCACCAA GCCGCTCACC GACCGCACGA TCGCGGCGGT TCGCAAGGCG 
CTGCGCGACG CGAAGCTCAA GCCCGACGAC CTGCAAGGCA TCGTGCTGGT CGGCGGCTCC 
ACCCGCATGC CGCAGATCCG CCGCGCCGTC GCCGAATTCT TCGGCCGCGA GCCGCTCGTC 
AACCTGAACC CCGACGAGGT CGTGGCGCTC GGCGCCGCCA TCCAGGCCAA CCAGCTGGCC 
GGCAACAACG GCGCGGGCGA TCTGCTGCTG CTCGACGTGA TTCCGCTGTC GCTGGGCATC 
GAGACCATGG GCGGGCTGGT CGAGCGCATC GTGCCGCGCA ACCAGACCAT TCCCACGGCA 
ATGGCGCAGG ACTTCACCAC CTACCAGGAC GGCCAGACGG CCCTCGCACT GCACGTGGTG 
CAGGGCGAAC GCGACCTGGT CGCCGACTGC CGCAGCCTGG CGCGCTTCAC CTTGCGCGGC 
ATCCCGCCCA TGGCGGCAGG CGCGGCGCGC ATCCGCGTGA CCTTCACCGT CGATGCCGAT 
GGCTTGCTGA GCGTCAGCGC CAAGGAGCAG GGCAGCGGCG TGGAGGCCAG CGTGGCGGTC 
AAGCCTTCGT ACGGACTCTC GGACGACCAG ATCGCGACCA TGCTGCAGGA GAGCTTTTCC 
ACCGCGCAGC AGGACATGCA GGCGCGTGCG CTGGTGGAGG CGCGCGTCGA TGCCGAGCGC 
ATGCTGCTTG CCACCCAGAG CGCGCTCGAT GCTGACGGCG ATCTGCTGGG CGAAGAAGAG 
CGCGCTGTCA TCGATGCGTC GATGGCGAAG CTGCGCGAAG CCGCCAAGGG CAATGACGCC 
GCGGCCATCG AAGGCGCCAC CAAGGCGCTG GCCAACGACA CCGAAGCCTT TGCCGCCCAG 
CGCATGAACG CGGGCATTGC GCGCGCGTTG TCGGGCCGCA AGCTCGAATC CCTCTGA 

 

Protein sequence

MALLQISEPG QAPDPHQRRI AVGIDLGTTH SLVAAVRNGV AECLPDDQGR VILPSAVRYL 
DRERRQIGFD ALAARAQDAA NTITSVKRLM GRGLADIANR ESMSYRLVDE GGMVKVETAA 
GIKSPVEISA EILATLRYRA EDTFDGELYG AVITVPAYFD EGQRQATKDA AQLAGLNVLR 
LISEPTAAAI AYGLDNASEG VYAVYDLGGG TFDISILRLT QGVFEVIATG GDSALGGDDY 
DHALADFVLA QTGLQVGSDA DKAAVLVAAR AAKEALTDAD SVAFHAKLAG GAARFDLARA 
QFDAATKPLT DRTIAAVRKA LRDAKLKPDD LQGIVLVGGS TRMPQIRRAV AEFFGREPLV 
NLNPDEVVAL GAAIQANQLA GNNGAGDLLL LDVIPLSLGI ETMGGLVERI VPRNQTIPTA 
MAQDFTTYQD GQTALALHVV QGERDLVADC RSLARFTLRG IPPMAAGAAR IRVTFTVDAD 
GLLSVSAKEQ GSGVEASVAV KPSYGLSDDQ IATMLQESFS TAQQDMQARA LVEARVDAER 
MLLATQSALD ADGDLLGEEE RAVIDASMAK LREAAKGNDA AAIEGATKAL ANDTEAFAAQ 
RMNAGIARAL SGRKLESL