| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2142 |
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| Symbol | |
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| ID | 7973828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2288167 |
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| End bp | 2289387 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792729 |
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| Product | cysteine desulfurase IscS |
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| Protein accession | YP_002944043 |
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| Protein GI | 239815133 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
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| TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS
[TIGR03402] cysteine desulfurase NifS |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.456248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGTCA CTCCTCATTT CCCGATCTAT CTCGATTACG GCGCCACCAC GCCGGTTGAC
CCGCGCGTGG TCGACGCCAT GATCCCCTGG TTGCGCGAGC ACTTCGGCAA CCCGGCGTCG
CGCAGCCACG CCTGGGGCTG GGAGGCTGAA GAGGCGGTCG AGAAGGCGCG CGGCTACGTG
GCCGAACTGA TCGGAGCCGA CCCGCGCGAG ATCGTCTGGA CCTCCGGCGC CACCGAGTCG
AACAACCTCG CGCTCAAGGG CGCGGCCCAT TTCTACAAGG GCAAGGGCAA GCACCTCATC
ACGGTGAAGA CCGAGCACAA GGCCGTGCTC GACACCATGC GCGAACTCGA GCGCCAGGGC
TTCGAAGTCA CCTACATGGA CGTCGAGGAA AACGGCCTGC TCGACCTGGA CAAGTTCAAG
GCGGCGATCC GCCCCGACAC CATCCTTGCG AGCGTGATGT ACGTCAACAA CGAGATCGGC
GTCATCCAGG ACGTGGTCGC GCTCGGCAAC GCCTGCCGCG AAAAAGGCGT GATCTTCCAT
GTCGACGCGG CCCAGGCCAC CGGCAAGGTC GAGATCGACA TCGCCAAGCT GCCCATCGAC
CTGATGAGCC TGGCTTCGCA CAAGACCTAC GGCCCCAAGG GCATCGGCGC GCTGTACGTG
CGCCGCAAGC CCCGCGTGCG GCTCGAGGCA CAGATGCACG GCGGCGGCCA CGAGCGCGGC
ATGCGTTCGG GCACGCTGCC CACGCACCAG ATCGTGGGCA TGGGCGAGGC CTTCCGCATC
GCCAAGCTCG AAATGAAGGA AGACATCGCC AAGGCGGCGC GCCTGCAGAA GCGCCTGCTC
GACGGCCTGA AGGACGTGGA CCAGGTGTTC ATCAACGGCG ACCTCGAGCA GCGTGTGCCG
CACAACCTGA ACATGAGCTT CAACTACGTG GAAGGCGAGT CGCTGATCAT GGGCATCAAG
GGCTTGGCGG TGTCGTCGGG TTCGGCCTGC ACCTCGGCCA GCCTCGAACC CAGCTACGTG
CTGCGCGCCC TGGGCCGCAG CGACGAGCTG GCCCACAGCA GCCTGCGCAT GACCATCGGC
CGTTTCACGA CCGAGGAAGA AATCGACTAC GCCATCTCGA CCATCAAGCA CAACGTCGCC
AAGCTGCGCG AGCTGAGCCC CCTGTGGGAG ATGTTCCAGG ACGGCGTCGA CATCAGCACG
ATCCAGTGGT CGGCCCACTG A
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| Protein sequence | MDVTPHFPIY LDYGATTPVD PRVVDAMIPW LREHFGNPAS RSHAWGWEAE EAVEKARGYV
AELIGADPRE IVWTSGATES NNLALKGAAH FYKGKGKHLI TVKTEHKAVL DTMRELERQG
FEVTYMDVEE NGLLDLDKFK AAIRPDTILA SVMYVNNEIG VIQDVVALGN ACREKGVIFH
VDAAQATGKV EIDIAKLPID LMSLASHKTY GPKGIGALYV RRKPRVRLEA QMHGGGHERG
MRSGTLPTHQ IVGMGEAFRI AKLEMKEDIA KAARLQKRLL DGLKDVDQVF INGDLEQRVP
HNLNMSFNYV EGESLIMGIK GLAVSSGSAC TSASLEPSYV LRALGRSDEL AHSSLRMTIG
RFTTEEEIDY AISTIKHNVA KLRELSPLWE MFQDGVDIST IQWSAH
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