Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2142 |
Symbol | |
ID | 7973828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2288167 |
End bp | 2289387 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792729 |
Product | cysteine desulfurase IscS |
Protein accession | YP_002944043 |
Protein GI | 239815133 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS [TIGR03402] cysteine desulfurase NifS |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.456248 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGTCA CTCCTCATTT CCCGATCTAT CTCGATTACG GCGCCACCAC GCCGGTTGAC CCGCGCGTGG TCGACGCCAT GATCCCCTGG TTGCGCGAGC ACTTCGGCAA CCCGGCGTCG CGCAGCCACG CCTGGGGCTG GGAGGCTGAA GAGGCGGTCG AGAAGGCGCG CGGCTACGTG GCCGAACTGA TCGGAGCCGA CCCGCGCGAG ATCGTCTGGA CCTCCGGCGC CACCGAGTCG AACAACCTCG CGCTCAAGGG CGCGGCCCAT TTCTACAAGG GCAAGGGCAA GCACCTCATC ACGGTGAAGA CCGAGCACAA GGCCGTGCTC GACACCATGC GCGAACTCGA GCGCCAGGGC TTCGAAGTCA CCTACATGGA CGTCGAGGAA AACGGCCTGC TCGACCTGGA CAAGTTCAAG GCGGCGATCC GCCCCGACAC CATCCTTGCG AGCGTGATGT ACGTCAACAA CGAGATCGGC GTCATCCAGG ACGTGGTCGC GCTCGGCAAC GCCTGCCGCG AAAAAGGCGT GATCTTCCAT GTCGACGCGG CCCAGGCCAC CGGCAAGGTC GAGATCGACA TCGCCAAGCT GCCCATCGAC CTGATGAGCC TGGCTTCGCA CAAGACCTAC GGCCCCAAGG GCATCGGCGC GCTGTACGTG CGCCGCAAGC CCCGCGTGCG GCTCGAGGCA CAGATGCACG GCGGCGGCCA CGAGCGCGGC ATGCGTTCGG GCACGCTGCC CACGCACCAG ATCGTGGGCA TGGGCGAGGC CTTCCGCATC GCCAAGCTCG AAATGAAGGA AGACATCGCC AAGGCGGCGC GCCTGCAGAA GCGCCTGCTC GACGGCCTGA AGGACGTGGA CCAGGTGTTC ATCAACGGCG ACCTCGAGCA GCGTGTGCCG CACAACCTGA ACATGAGCTT CAACTACGTG GAAGGCGAGT CGCTGATCAT GGGCATCAAG GGCTTGGCGG TGTCGTCGGG TTCGGCCTGC ACCTCGGCCA GCCTCGAACC CAGCTACGTG CTGCGCGCCC TGGGCCGCAG CGACGAGCTG GCCCACAGCA GCCTGCGCAT GACCATCGGC CGTTTCACGA CCGAGGAAGA AATCGACTAC GCCATCTCGA CCATCAAGCA CAACGTCGCC AAGCTGCGCG AGCTGAGCCC CCTGTGGGAG ATGTTCCAGG ACGGCGTCGA CATCAGCACG ATCCAGTGGT CGGCCCACTG A
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Protein sequence | MDVTPHFPIY LDYGATTPVD PRVVDAMIPW LREHFGNPAS RSHAWGWEAE EAVEKARGYV AELIGADPRE IVWTSGATES NNLALKGAAH FYKGKGKHLI TVKTEHKAVL DTMRELERQG FEVTYMDVEE NGLLDLDKFK AAIRPDTILA SVMYVNNEIG VIQDVVALGN ACREKGVIFH VDAAQATGKV EIDIAKLPID LMSLASHKTY GPKGIGALYV RRKPRVRLEA QMHGGGHERG MRSGTLPTHQ IVGMGEAFRI AKLEMKEDIA KAARLQKRLL DGLKDVDQVF INGDLEQRVP HNLNMSFNYV EGESLIMGIK GLAVSSGSAC TSASLEPSYV LRALGRSDEL AHSSLRMTIG RFTTEEEIDY AISTIKHNVA KLRELSPLWE MFQDGVDIST IQWSAH
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