| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2141 |
|---|
| Symbol | |
|---|
| ID | 7973827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2287551 |
|---|
| End bp | 2288087 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644792728 |
|---|
| Product | transcriptional regulator, BadM/Rrf2 family |
|---|
| Protein accession | YP_002944042 |
|---|
| Protein GI | 239815132 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.426314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTCA CTACCAAAGG CCGTTTTGCG GTCACAGCAA TGATCGATCT GGCGCTGCGT
CAGAACACCG GTCCGGTCAC GCTGGCTGCG ATCAGCCAGC GGCAGCAGAT TTCGTTGTCG
TATCTCGAAC AGCTGTTCGG CAAACTGCGC CGCCATGAGC TGGTCGAGTC GACCCGCGGC
CCCGGCGGCG GCTACAGCCT CGGCCGCAAG GCTGCAGATA TCACCGTCGC AGACATCATT
GTTTCCGTCG ATGAGCCCAT CGATGCCACG CAATGCGGCG GCAAGGAAAA CTGCCTGGGC
GAAGCCGGCC GCTGCATGAC GCACGAGCTC TGGGCCTCGC TGAACCAGCG CATGGTCGAG
TTCCTCGATT CCGTCACGCT GCAGAAGCTG GTCGACGACC AGATCGCCAA GGGCGTGCAG
ATCGAGAACA AGCCAGTCGT CAAGCGCGCG ATTTCCGCGC AGCCGGTGGT CAAGCCGATT
CGCGTGAACG CGCCGAATTC GGTGTTTGCC CTCGGCAACG CCTTCGCGAA GTCCTGA
|
|---|
| Protein sequence | MRLTTKGRFA VTAMIDLALR QNTGPVTLAA ISQRQQISLS YLEQLFGKLR RHELVESTRG
PGGGYSLGRK AADITVADII VSVDEPIDAT QCGGKENCLG EAGRCMTHEL WASLNQRMVE
FLDSVTLQKL VDDQIAKGVQ IENKPVVKRA ISAQPVVKPI RVNAPNSVFA LGNAFAKS
|
|---|
| |