| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2138 |
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| Symbol | |
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| ID | 7973824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2282322 |
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| End bp | 2283737 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792725 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_002944039 |
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| Protein GI | 239815129 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.621716 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCTATC AACTCTACGA AGCCCAGCGT TCCCTCATGG AGCCGTTTTC GGACTTCGCG
CAAGCGGCGT CCAAGCTTTA TGGCCAAGGC GCGGTGTGGG GCCAGCTGCC CATGGCCCAG
CGCATGGCGG CGGGCTACGA CCTGCTCTAC CGCCTAGGCA AGGACTACGA GAAGCCCGAG
TTCAACATCA AGTCCGTCAA GGTCGAGGGC GAGGACGTGG TCATCCAGGA GGCCGTCGAG
CTCGACAAGC CCTTCTGCGA GCTGCGCCGC TTCAAGCGCT TCACCGACGA ACCGCACATC
CTCAAGACGC TCAAGAGCCA GCCCGTGGTG CTGATCGTGG CGCCGCTGTC GGGCCACTAC
GCCACGCTGC TGCGCGACAC CGTGCGCACC ATGCTGCAGG ACCACAAGGT CTACATCACC
GACTGGAAGA ACGCGCGCCT CGTGCCCATG TCGGAGGGTG AGTTCCACCT CGACGACTAC
GTCAACTACG TGCAGGAGTT CATCCGCCGC CTGCAGGCCG AGTACGGCAA CTGCCACGTG
GTGAGCGTGT GCCAGCCGAC CGTGCCGGTG CTGGCGGCCG TGTCGCTGAT GGCCAGCCGC
GGCGAGCCGC TGCCCCTGAC CATGACGATG ATGGGCGGGC CGATCGACGC GCGCAAGTCG
CCCACCGCGG TGAACAACCT CGCGATGAAC AAGAGCTTCG AGTGGTTCGA GAACAACGTG
ATCTACCGCG TGCCGCAGGG CTTCCCGGGT GAAGGCCGCC GCGTGTACCC GGGCTTCCTG
CAGCACACGG GCTTCGTGGC CATGAACCCC GACCGCCACG CCTCGAGCCA CTACGACTAC
TTCAAGGACC TCATCAAGGG CGACGACGCA AGCGCCGAGG CCCACCGCAA GTTCTACGAC
GAGTACAACG CCGTGCTCGA CATGGACGCC GACTACTACC TGGACACCAT CCGCACCGTG
TTCCAGGAGT TCGAGCTCGT GAACGGCACC TGGGACGTCA AGAACCCCAA GGGCCAGATC
GAGCGCGTGC GTCCGCAGGA CATCCATTCG ACCGCCCTGC TGACCGTCGA GGGCGAGCTC
GACGACATCT CGGGCTCGGG CCAGACCGAG GCCGCGCACA GCCTGTGCAC CGGCATTGCC
GATTCGCACC GCGAGCACTA CGAAGTCAAG GGCGCGGGCC ACTACGGCAT CTTCAGCGGC
CGCCGCTGGC GCGAACTGGT CTATCCCAAG GTGCGCAAGT TCATCGCGGC CCACGACCAG
CCGCAGCGCC GCGCCGGCGC ACGCGAAAGC CTGCCGGCCG AAGACCGCAT CAAGCCGGGC
CGGAAGACGG CGGCCGTTGC AGCCACCAAG AGCACCGCGG CCAGGAAAGC GGTGGCGGCC
GCCCCCGCCA AGAAGCCCGC GGCACGCAGG AAGTGA
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| Protein sequence | MLYQLYEAQR SLMEPFSDFA QAASKLYGQG AVWGQLPMAQ RMAAGYDLLY RLGKDYEKPE
FNIKSVKVEG EDVVIQEAVE LDKPFCELRR FKRFTDEPHI LKTLKSQPVV LIVAPLSGHY
ATLLRDTVRT MLQDHKVYIT DWKNARLVPM SEGEFHLDDY VNYVQEFIRR LQAEYGNCHV
VSVCQPTVPV LAAVSLMASR GEPLPLTMTM MGGPIDARKS PTAVNNLAMN KSFEWFENNV
IYRVPQGFPG EGRRVYPGFL QHTGFVAMNP DRHASSHYDY FKDLIKGDDA SAEAHRKFYD
EYNAVLDMDA DYYLDTIRTV FQEFELVNGT WDVKNPKGQI ERVRPQDIHS TALLTVEGEL
DDISGSGQTE AAHSLCTGIA DSHREHYEVK GAGHYGIFSG RRWRELVYPK VRKFIAAHDQ
PQRRAGARES LPAEDRIKPG RKTAAVAATK STAARKAVAA APAKKPAARR K
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