| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2122 |
|---|
| Symbol | |
|---|
| ID | 7973808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2265890 |
|---|
| End bp | 2266891 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644792709 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_002944023 |
|---|
| Protein GI | 239815113 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATA TCGCTAAGTC GTTGAATTTA AAAGAGAAAA CTGTCTCTGT CGCTCCTATG
ATGGATTGGA CGGACCGCCA TTGCCGTTAC TTCCATCGGC TGATGTCGCG CCATGCGCTG
CTCTATACCG AGATGGTGAC CACCGGCGCG CTGGTGCATG GCGACGTCCC GCGGCACCTG
CGCTTCAACG AGGAAGAGCA TCCCGTGGCC CTGCAGCTGG GCGGCAGCGA ACCGGCCGAC
CTCGCGCATT GCGCGCGGCT CGGCGAGGAG TGGGGCTATG ACGAGATCAA TCTCAACTGC
GGCTGCCCCA GCGAGCGGGT GCAGCGCGGC GCCTTTGGTG CCTGCCTGAT GGCCGAGCCG
GCGCTGGTGG CCGATTGCGT GAAGGCCATG GTCGACGCCA CCCGCCTGCC GGTCACGGTC
AAGCACCGCA TCGGCATCGA CAAGATCGAG AGCTACGAAT TCGTGCGCGA CTTTGTCGGT
GCGGTGAGCG AGGCCGGCTG CCGCGGCTTC ATCGTGCATG CGCGCAACGC CTGGCTGCAG
GGCCTGAGCC CGAAGCAGAA CCGCGAGATT CCGCCGCTGC GCTACGAACT CGTGCATCGG
CTGAAGCACG AGTTTCCGGA GCTGGATTTC TCGATCAATG GCGGCATCTC GGCCAGCGCG
CAGGTGCATG AGCACCTGCG GCTGCTCGAC GGCGTGATGG TCGGCCGGGA GGCCTACCAC
AACCCCTGGT GGCTGGCCGA GTGGGACGCG GAGTTCTACG GCGCAGTGCC GCAGCCGCTG
ACGCGCGAAG ACGTCGAATC GCTGATGTGC GACTACATGG TCCGCGAGGC GGCCGAGCAC
GGCACGCAGT GGTCGTCGAT CGCGCGGCAC ATGCTGGGCC TGCGCAACGG CCTGCCCGGC
GCGCGCCGCT GGCGCCAGGT CTGGAGCGAC CATCGGCTCA AGACGCGCCC GCCGCACGAG
GTGATGGCAC TGGCGCACGA ACCCGCGGCG CAGGAGGCCT GA
|
|---|
| Protein sequence | MNDIAKSLNL KEKTVSVAPM MDWTDRHCRY FHRLMSRHAL LYTEMVTTGA LVHGDVPRHL
RFNEEEHPVA LQLGGSEPAD LAHCARLGEE WGYDEINLNC GCPSERVQRG AFGACLMAEP
ALVADCVKAM VDATRLPVTV KHRIGIDKIE SYEFVRDFVG AVSEAGCRGF IVHARNAWLQ
GLSPKQNREI PPLRYELVHR LKHEFPELDF SINGGISASA QVHEHLRLLD GVMVGREAYH
NPWWLAEWDA EFYGAVPQPL TREDVESLMC DYMVREAAEH GTQWSSIARH MLGLRNGLPG
ARRWRQVWSD HRLKTRPPHE VMALAHEPAA QEA
|
|---|
| |