| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2101 |
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| Symbol | |
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| ID | 7972503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2243498 |
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| End bp | 2244640 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644792690 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002944004 |
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| Protein GI | 239815094 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTA AACTTCATGG TCTGGCTCTT GCTGCAATGG GTCTCATTGC AACCAGTGCC
CTTTCACAAA CCCTGGTGAC AATTGCTCAT GTTGCACCAA CGAGTGGTGC CATCGCGCAT
CTGGGTAAAG ATGACGAAAA CGGAGCAATC TTGGCCGTTG AGGAACTCAA CAAAGAGGGC
GTCAAGATTG GAGGTCAAAA GGTCAACATA AAGCTCCAGA CAGAAGACGA TGCAGCGGAC
CCCAAACAGG GTGCCGCAGT TGCGCAGAAG TTGGCTGATA CCAAGGTGGC TGGCGTAATT
GGACATCTGA ATTCTGGTAC GTCCATTCCC GCGTCCAGGA TCTATAACGA AGCGGGCATC
CCCCAGATAT CTCCTGCAGC AACCAACCCC AAGTACACCC GCCAGGGCTT CAAAGTTACG
TTCCGAGTTG TGGCCGATGA TACGCAGTTG GGTGGAGCGC TGGGGCGTTA CGCTGTAACC
GCTCTTAAGG GCCAGTCTAT CGCTATCATC GATGATCGCA CTGCATATGG CCAGGGCGTC
GCGGAAGAAT TCAGCAAAGC CGTCGTGGCT TCCGGTGGAA AGGTGGTAGC AAGGGAATTC
ACCACCGACA AAGCAACCGA CTTCAATGCT ATTTTGACGG CTATTAAAGG CAAGAAGCCT
GATGTGGTGT TCTTCGGCGG CACTGATGCG GTTGCAGGAC CGATGCTGCG ACAGATGAAG
TCCCTCGGAC TTTCGGCCAA ATTTATGGGC GGCGACGGCA TCTGCTCCAT TGGTTTAACT
AAGCTCGCTG GTGATGCAAT ATCTGACAAC CAAGTCTTCT GCGCCGAAGC TGGTGGAGTG
GAAAAAGGCA GCAAATATGC GGTTGCCAGG GCTGAGTTTG ACAAGAGGTA CAAGGCCAGA
TTTGGCTCTG ACGTTCAGAT TTACGCTCCG TACTCTTATG ACAGCGTGAA ATTGATGGTC
GCCGCCATGG TCAAAGCGGG ATCTTCTGAT CCAGCGAAGT ACCTGCCTGC GCTCGCGGCC
ACTAAATACG AAGGCGTGAC TGGCCCGATC TCCTTTGACG CAAAAGGGGA CATTTTGGGA
GGTGCCTTGA CGTTGAAGAC GATCAAAGGA GGCCAGTTCG AAGAGCTGGC GGTGATTCGC
TGA
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| Protein sequence | MKFKLHGLAL AAMGLIATSA LSQTLVTIAH VAPTSGAIAH LGKDDENGAI LAVEELNKEG
VKIGGQKVNI KLQTEDDAAD PKQGAAVAQK LADTKVAGVI GHLNSGTSIP ASRIYNEAGI
PQISPAATNP KYTRQGFKVT FRVVADDTQL GGALGRYAVT ALKGQSIAII DDRTAYGQGV
AEEFSKAVVA SGGKVVAREF TTDKATDFNA ILTAIKGKKP DVVFFGGTDA VAGPMLRQMK
SLGLSAKFMG GDGICSIGLT KLAGDAISDN QVFCAEAGGV EKGSKYAVAR AEFDKRYKAR
FGSDVQIYAP YSYDSVKLMV AAMVKAGSSD PAKYLPALAA TKYEGVTGPI SFDAKGDILG
GALTLKTIKG GQFEELAVIR
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