Gene Vapar_2099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2099 
Symbol 
ID7972501 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2241784 
End bp2242434 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content51% 
IMG OID644792688 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002944002 
Protein GI239815092 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGAACA CTACCCGTAC AAAGATCATG GAGGCAGCCG AGCAGCTGCT GCGCACCCGA 
GGATATTCAG ATTTCAGCTA CGCTGATTTG GTTGAACAGG CAGGCATCCG AAAGCCGAGC 
ATTCATCACC ACTTTCCGAC TAAAGAAGAT CTCGGTGTGG CAATCGTTAG CGACTATCTT 
GTGAACTTCA AAGCCACACT GGATGACACT CTCGTTTGCC AGCCAACCGC AGCGGACCGG 
CTGGCTTCCT ACGCAGAGTT TTTTTCGGAG ATCATTGAGG ATGGCTCATT TCCGCTTTGT 
ACTGCGCTTG CGGCAGAACT TGGTGCGCTT CCAAAGAGCA TGCGTGACCA GACCGTCCAA 
TTCTTCAATA TGCATCTTGC TTGGTTGGAG AAAGTGGTTG ACATTGGCAA GGCCAAAGGT 
GAATTCACGA AGGCTCCAAA TGGAGAGCAA GCGGCGAAAA TATTGTTGAG TGCGATTGAA 
GGCGGGGCAG TCGTTGGATG GGCACTATCT CGCCCTGAAG TGGTGCGCTC CAGCTTTGAT 
GAAATCATTT TGCGATGGAG TGACGTCCCA AAACCTCATC GGTCCCGGCA TTCAATCAAA 
AATAAGAATT TGGAGGACCG GCAATCCACC GATCTTAAGC TGGGACACTA A
 
Protein sequence
MENTTRTKIM EAAEQLLRTR GYSDFSYADL VEQAGIRKPS IHHHFPTKED LGVAIVSDYL 
VNFKATLDDT LVCQPTAADR LASYAEFFSE IIEDGSFPLC TALAAELGAL PKSMRDQTVQ 
FFNMHLAWLE KVVDIGKAKG EFTKAPNGEQ AAKILLSAIE GGAVVGWALS RPEVVRSSFD 
EIILRWSDVP KPHRSRHSIK NKNLEDRQST DLKLGH