| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2091 |
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| Symbol | |
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| ID | 7972493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2233098 |
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| End bp | 2234810 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792681 |
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| Product | hypothetical protein |
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| Protein accession | YP_002943995 |
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| Protein GI | 239815085 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTTCGC GTAAGGAACT GGATGGCGAG CGCTTTCGCG TTCGGCCGGC GGCCCCAAAG
TCCCGCGCAG GACCGCGCCC GGAGCGCTTC GTGTCCCGGG TGCTCAGGGA AGTTTCGAAG
ACCGGTGCCA AAGCGTCCGG CAAACGAGCA GGGCGACCCG CGTCGACCTT TGGCCGAGGC
CGAGGCCGAG TCGCGGCGGG CATGGCAGTC GATCGCCTAG GCGAGCATGC CCGGCGCGTG
GTCATCAAGG GCCGCTTCGT GGTGCTCCGG AAAGCCGGCG TGAACTCGGT ATCCACCCAC
CTGCGTTACA TCGAGCGCGA TGGGGTGACA CGTGACGGGC AGCGAGGCCA GGCCTACGGG
CCCGGCACGG ATGTCGCCGA TCTGAAGGCT TTTGAGGAGC GGGGCAGCGG AGATCGCCAC
CAATTCCGCT TCATCGTCTC GGCCGAGGAT GCGATGGAGC TGGAAGACCT ACGCGGCTTT
ACGCGACAAC TGATGCAGCG CATGGCGGTG GATCTGGAAA CGCCGCTGGA CTGGGTGGCG
GTCGACCACT GGGACACCGA CAACCCGCAC ACCCACATCG TGCTGAACGG CCGGACCGCC
GGCAAGGAAG ACCTCATCAT CGCGCCGGAC TACATCGCCC AGGGCATGCG CCTGCGCGCC
AGCGAGATCG CGACCGAATG GCTGGGGCCG CGTACTGAGT TGGAAATGCG GCAAAGCCTG
CAACGGGAAG TCGAGCAGCA GCGGTTCACG GGCCTGGACA GGGCCTTGTT GCACCAAGCC
GTGGCGGAGA CCGTGGACCT GACCGGTCGG CCCGGAGACC GCGAGCGCCA GAACTTGCTG
CGGGCACGGC TGCAGCGGCT CGAAGCCATG GCGTTGGCTG AACGGATCGA CGCCAACCGA
TGGCGGCTGG CGCCAAACAT GGCGCGCACG TTGACTGAGA TAAGCGAGCG CGAGGAGGCA
CTGGACATCA TGCGCCGGGC ACTTCAGGGC CAGCAGCGCG AATGTGTTTT TGATGGCGCG
TCGGTAACTC CAGTCATGGG CCGCATCGTC GGCAAGGGGC TGGCTGACGA ACTGCACGAC
CGGGGCTACC TGGTGGTCGA CGGCATCGAT GGCCGGGCGC ACTACCTGAA ACTACCGGGT
CGTGCCGATC TGTCGGCGCT GCCGGTGGGC GGCATAGTGG AAGCAAAGCC GCCGGGGCGG
GAGCGGGCCG TGGACAACTC CATTGCGGCC ATCATCCAGG ATGGCATCTA CAAGTCCGCC
GACCATCTGG TCCGACTAGA GCAGGCGGCA GACCGCGATC CGCAGGCCAC GATCGATGTC
CACGTGCGCC GGCTCGAGGC TCTACGCCGC AGCGGCGTCG TGGCGTGCGT GGCCGATGGC
GTCTGGCAGG TGCCGCCGGA CCTGGTGCGG AAGGGCCAGC GACATGACGC ACAGAAGAGT
ATGGGGCTGA CCATCGAATT GCGCTCGCAC CTTCCCATCG ATCAACAGGT GCGTGCCATC
GGTGCGACCT GGCTGGACAG GCAATTGATC GGGGAGGGCG GCGGACTGGC AGCTCAGGGC
TTTGGTGCGC AGATACGCGA GGCGATGAGG CGCCGCGCGG ATTTTCTCGT CGGATTGGGG
TTGGCCGAGC ACCGGGGAAA CCGCGTCGTG CTCGCGCGCA ACTTGTTTCG GTCTGGCGGG
AGTCTAGGAA AAGGGTGCGC AAAAGCCGAT TGA
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| Protein sequence | MASRKELDGE RFRVRPAAPK SRAGPRPERF VSRVLREVSK TGAKASGKRA GRPASTFGRG
RGRVAAGMAV DRLGEHARRV VIKGRFVVLR KAGVNSVSTH LRYIERDGVT RDGQRGQAYG
PGTDVADLKA FEERGSGDRH QFRFIVSAED AMELEDLRGF TRQLMQRMAV DLETPLDWVA
VDHWDTDNPH THIVLNGRTA GKEDLIIAPD YIAQGMRLRA SEIATEWLGP RTELEMRQSL
QREVEQQRFT GLDRALLHQA VAETVDLTGR PGDRERQNLL RARLQRLEAM ALAERIDANR
WRLAPNMART LTEISEREEA LDIMRRALQG QQRECVFDGA SVTPVMGRIV GKGLADELHD
RGYLVVDGID GRAHYLKLPG RADLSALPVG GIVEAKPPGR ERAVDNSIAA IIQDGIYKSA
DHLVRLEQAA DRDPQATIDV HVRRLEALRR SGVVACVADG VWQVPPDLVR KGQRHDAQKS
MGLTIELRSH LPIDQQVRAI GATWLDRQLI GEGGGLAAQG FGAQIREAMR RRADFLVGLG
LAEHRGNRVV LARNLFRSGG SLGKGCAKAD
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