| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2089 |
|---|
| Symbol | |
|---|
| ID | 7972491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2231665 |
|---|
| End bp | 2232192 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792679 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943993 |
|---|
| Protein GI | 239815083 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCAC CGCCGCTCTC TGCGCGGCCC TCGCCCCCAG CCGCGTGGTC CCCGGGGACC
ACGCGCGGGG CCATCCCCAT GCGGGTGTCA CTGGCTTTCG TCGAGCATCG CGTCAACGTC
TGGCTGCGCT TCGGTCGGCC GGCGCGCGAG ACCATCCTCG ACCGCTGGCG GCGCGTCGCG
ATCTTCGAGT CGGGTGCGGT CTGCTGCCGT GTCAAGTGGA TCGGCAACGA CTATGGCACG
GCGCTCTGGC ACCTGATGGT GCTGCAGGCC CCCATGCCGC CCGACGGCGC ACAGCGCGTT
GCCGGTGTAC AGCCGGGCGC GCGCATTCTG CTGCGCGCCG ATGGCGAGAG CCAGGTCAAG
GCCGTGCTCG CGGCGGTCGA CGCCATCGAG GCCTTGGGCA TCGACCCGTG CGCGGTGGCC
GTCACGTACT GGCGCACGGT CGGCAATCGG CTGGCTGCGC GCCAGCCGCT GCCGGCCTAC
ACCGCCGAGC GGCATGCGGC GCATCTGGCG CGCGGGGCGC TGCGATGA
|
|---|
| Protein sequence | MQPPPLSARP SPPAAWSPGT TRGAIPMRVS LAFVEHRVNV WLRFGRPARE TILDRWRRVA
IFESGAVCCR VKWIGNDYGT ALWHLMVLQA PMPPDGAQRV AGVQPGARIL LRADGESQVK
AVLAAVDAIE ALGIDPCAVA VTYWRTVGNR LAARQPLPAY TAERHAAHLA RGALR
|
|---|
| |