| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2086 |
|---|
| Symbol | |
|---|
| ID | 7972488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2229622 |
|---|
| End bp | 2230626 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644792676 |
|---|
| Product | Plasmid replication initiator protein-like protein |
|---|
| Protein accession | YP_002943990 |
|---|
| Protein GI | 239815080 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5534] Plasmid replication initiator protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGC GTCCGAGCGA ACGCGAACAG CTGCCGCTGT TCCGCGCGCT GCCGGGCGCT
GACATGCCGC TGCGCGATGC GCAGGACCTG ATGGCCTACC CGTTCTTCTC GCTGGCCAAG
TCGCCGCGCA CCGTGCCGAT CCGCTTCGAA GCCGGCGGTG TCTCGCTCAC CGTCGAAGGG
GTGCCCGAGC ACGGCATCGC CACGATCTGG GATGCGGACG TGTTGATCTG GGCCGCGAGC
CAGATCGTCC AGGCCAAGAA GGAAGGCATC GCGCCTTCGC GCCTGATGGT CGCCACGCCC
TACGAGATCC TGCGCTTTGC GCAGCGCGGC ACCGGCCGCA GCGACTACCT GGCGCTGCGC
GCCGCGCTGG ACCGGCTGCA GTCCACCACC GTCGCCACGA CGCTGCGCCA GCGGGAGCGT
CCGAACGGTG CGATGCGCGT GCACCGCTTC TCCTGGATCA ACGAATGGAA GGAGTACATC
CGACCCGACG GACGCGCCGA CGGCATCGAG TTGATCCTGG CCGACTGGTT CTTCTCGGGC
GTGATGGACG AGGCCTTGGT GCTCACGCTC GATCCCACGT ACTTCCGGCT TTCCGGCGGC
ATCGAGCGTT GGCTATACCG GCTGGTGCGC AAGCACGGCG GCCGGCAGCC CGGGGGCTGG
CGCTTTGCAA TGCGCCACCT GCATCTGAAG TCCGGAAGCC TGCAACGCCA TTCCGACTTC
GCGCTGCAGG TGCGCCATCT GGTGCGGCGC CAGGCGCTGC CGGGCTACCG GCTGTCCATC
GAGCGCAGTG GCGGCATGGA GTCGTTGGCT TTCCGGCCGA TGCAGGGTGA ACCGTTTCAA
AGCGACTTAT CCACAGTTTC TGTTGAAGAA CCTGTGGATG ACGTGGGGAT GGGCTCGGTG
GATCGCCCGC ACGACGCTCG GTGGATCACC CGCAGAAACA TCGGTGGATC ACCCGCACCG
ATCGGTCCGA AGGCCGCGCC CGGCAACGGT TTCGGGCCTC CCTAA
|
|---|
| Protein sequence | MSKRPSEREQ LPLFRALPGA DMPLRDAQDL MAYPFFSLAK SPRTVPIRFE AGGVSLTVEG
VPEHGIATIW DADVLIWAAS QIVQAKKEGI APSRLMVATP YEILRFAQRG TGRSDYLALR
AALDRLQSTT VATTLRQRER PNGAMRVHRF SWINEWKEYI RPDGRADGIE LILADWFFSG
VMDEALVLTL DPTYFRLSGG IERWLYRLVR KHGGRQPGGW RFAMRHLHLK SGSLQRHSDF
ALQVRHLVRR QALPGYRLSI ERSGGMESLA FRPMQGEPFQ SDLSTVSVEE PVDDVGMGSV
DRPHDARWIT RRNIGGSPAP IGPKAAPGNG FGPP
|
|---|
| |