Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2068 |
Symbol | |
ID | 7972470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2211928 |
End bp | 2214096 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792661 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_002943975 |
Protein GI | 239815065 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.500479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGCTA TCCCTTCCGA ACGCGCGCAC AAACGCGTTC CCCTGTTTCG CCGCCTCCCT CTCGCGCTGG CCGTCTCGGC GCTGTTTGCC GGACCGGCCA TCGCCCAGTC TTCCGATAGC CCTGTCCAGG GCCAGCTGAA ACCCATCGAA GTGGTCGGCC GCGGCGAGTC GGGCACGTAC CAAGCCGAAG AAGCCGCCGG CGCCAAGACG GACCTGCCGC TGCGCGAACT GCCGCAATCG GTGCGCATCG TCACGCGCCA GGCCATCGAC GACCTGGGGG CCACCAAGCT CGATGACGTG CTCGACTATG TCGGCGGCGT CTCGCGGCAG AACAACTTCG GCGGCCTCTG GGACAACATC GCGATCCGCG GACTGCCCGG CAACGAGAAC ACCGGGATGG CGACGCTGCT CAACGGCTTT TCCTCGAACC GGGGGTTCAA CGCGCCGCGC GATCTGGCGG GAGTGGAGCG CATCGAGTTC CTCAAAGGCA GCGCGGCTGC GCTTTACGGC AGCAGTGAAC CCGGTGGCAC GCTGAACATC GTCTCCAAAC GCCCATTGTG GACGGCGGCG AACTCGGTCG AGGCCTATGG GGGAAGCCAG GGCCTCAAGC GAGGCGCTTT CGACAGCACC GGCCCGATCG GCGAGAACTT CGCCTACCGG CTCAACGTGG CGGTGGAAGA CCGCAACAGC TTCCGCGACT TCGTGGGCGC CAAACGAGAG GTCATTGCCC CGGCCTTCAC CTGGAAGCTC GGACGCGACA CGGTGCTGGA GTACGCGGGT GAGTACCTGC GCCATGCCAC CCCGCTGGAC CGCGGTGTGG TGGCGGTCGA CAACCGGCTT GGCGCCATTG CGCGCAACCG CTTCCTCGGC GAGCCGGCCG ACGGCGACGT GACAGTCAAG AACCAGACGC ACCAGTTCAT CCTGTCCCAT GAATGGAATT CCACGTGGCG CAGCCGGGTA GGCCTGTCGT ACCGCGAGAC TTCGCTGGAC GGTTTTTCCA CCGAGCCGAC TGCACTGCTG GCCAACGGCA ACCTCACGCG GCAGCGGCGC TACCGCGACT ACAGCTCGCA CGACATTGCG CTGCAGGCCG AACTGCAGGG CAATGTGAAG ACCGGCGCCA TCGAACACGA ACTCCTGTTC GGCGTGGAGA GCTTCCGCTT CAGCATGGAT TCCCTGATGC TGCGGGCGAA TCCGACGACC GCCAGGCCGT ATGCGATCAA CATCTACAAC CCGGTCTACG GCCAGCTTCA GCCGGTACCC ACGGCCAACA CCGACACGCT GGAACGCCAG AACAATAACG CGTTCTACGT CCAGGACGCG ATCAAGCTCT CGCCTGAATG GCGGCTCGTT GCGGGCGTGC GCGCCGACAA CTATCGCCAG TCGCTGCTGA ATCGCAGAAA CAGCATCACG GCCATCCAGG AGCCCTCGTC GACCTCACCG CGCATCGGTG TGAGCTGGCT GCCGACACCG CAGTGGACTT TCTACGCCAA TGCGGGCCGC TCGTTCAGGC CCAACACGGG TTCCGACTTC GCCTCGAACG GCTTTGCGCC CGAGACGGGC CGCGCGCTGG AACTCGGCAC CAAGTGGGAG AGCACGGACC AGCGCATGGG CGCCACCGCC GCGCTCTTCG ACATCCGCAA GCGCAACGTG CTGACCTCCG ACCCCGTCAA CACCGGCTAT TCGGTGGCGG CGGGCGAAAT CCGCAGCCGG GGCCTGGAGT TCGACTTCTT GGGCCAGGTC ACGAAGAACT GGCGCGTCAA TGCCAGTCTG GTGCTCAACG ACGTGGAAAT CACGAAGGAC AACACCCTGG AGGTCGGCGG CCGGCTGCTC AACGTGCCCC GGGTCAACGG CAGCGTGCTC GCGGTCTACG AGGACGGCTT TTCCAACGGC CAGCGCTACG GCATCGGCGG CGGCTTCACC CACATGGGCA AGCGCCTGGG CCAGGCCCGC ACGCAGGCTG AGGCGAACGC GGGAACTCCC GCGTTCGACC TGCCGGCCTA CACCACCGCC AAGCTGGTTG CGTACTGGCG CCTCAACCCC ACACTGCGTG TGACGCTCGA CGTCGACAAT CTTTTCGACA AGACCTACTA CACGAGTTCA TACAGCCGCG TCTGGGTCAC ACCAGGTACG TCGCGCACCT TCACCCTCGG TCTACAGGCC AAGTTCTGA
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Protein sequence | MIAIPSERAH KRVPLFRRLP LALAVSALFA GPAIAQSSDS PVQGQLKPIE VVGRGESGTY QAEEAAGAKT DLPLRELPQS VRIVTRQAID DLGATKLDDV LDYVGGVSRQ NNFGGLWDNI AIRGLPGNEN TGMATLLNGF SSNRGFNAPR DLAGVERIEF LKGSAAALYG SSEPGGTLNI VSKRPLWTAA NSVEAYGGSQ GLKRGAFDST GPIGENFAYR LNVAVEDRNS FRDFVGAKRE VIAPAFTWKL GRDTVLEYAG EYLRHATPLD RGVVAVDNRL GAIARNRFLG EPADGDVTVK NQTHQFILSH EWNSTWRSRV GLSYRETSLD GFSTEPTALL ANGNLTRQRR YRDYSSHDIA LQAELQGNVK TGAIEHELLF GVESFRFSMD SLMLRANPTT ARPYAINIYN PVYGQLQPVP TANTDTLERQ NNNAFYVQDA IKLSPEWRLV AGVRADNYRQ SLLNRRNSIT AIQEPSSTSP RIGVSWLPTP QWTFYANAGR SFRPNTGSDF ASNGFAPETG RALELGTKWE STDQRMGATA ALFDIRKRNV LTSDPVNTGY SVAAGEIRSR GLEFDFLGQV TKNWRVNASL VLNDVEITKD NTLEVGGRLL NVPRVNGSVL AVYEDGFSNG QRYGIGGGFT HMGKRLGQAR TQAEANAGTP AFDLPAYTTA KLVAYWRLNP TLRVTLDVDN LFDKTYYTSS YSRVWVTPGT SRTFTLGLQA KF
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