| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2064 |
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| Symbol | |
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| ID | 7972466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2204683 |
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| End bp | 2206854 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792658 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002943972 |
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| Protein GI | 239815062 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.228617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAGCA TCTTCCGCCT CCAACCACTG GCCGCCGCAC TGTGCACAGC CGGCCTGAGC
TTCGGTGCTG GCCCCGCGCT CGCGCAGAGC AGCGCGCAGC AGAGCCTGCC CCCGGTCACC
GTCAGCGCCG ACCGAGACAG CTACCAGGCC CCCGAGAGCG CGACCGCGAC GCGCACCGAC
ACCCCCTCGC TGCAGAACCC GCAAAGCACG CAGACCGTGC CGCTCTCGGT CATTCAGGAC
CAGAGTGCCT TGACCCTGGG CGACGCCCTG CGCAACGTGG CCGGCGTGCA GTTCGACTTC
GGCTTCAACG GCTCGGCGCA GCCGCTGGCC ATCCTGCGCG GCTTTCCGAG TGCCTCGATG
ACGGCCATGG GTCCGATGTC CGGCAGCTCC AGCTACTACA TCGACGGAAG CAAGGTCACC
GGCGTACCGA TCAACATGGC CAACGTCCAG TCGGTCGAAG TGATCAAGGG TCCGTCGAGC
GTGCTGTACG GCCGCGCCGA ACCGGGCGGT CTCATCAACG TGGTGACCAA GCCGATCAGC
AGCGTGCCGG CGTTCAGCTT CGAGCAGACG GTCGGCCAGT ACGGGCTGTC GCGCACCGGC
ATCGAGGCCT CGGGGCCGGT CAATGCGGAC GGCACCGTGC GAGCGCGCGT GGCCGCCTCG
TACTACAACG CGGACTCCAT TCGCGACTAC GTGACCGACA AGCTCGGTGC CTTCACCGGC
AGCCTGGCCT GGGTGCCGGA TGCGCGCACC AGCGTGACCG CAACCATCGA CTACAGCACC
CAGCGCTACC GCACCGACTA CGGCGTGCCC GCCGTGGGCG ACAGGCCGGC CAACCTGCCG
TGGTCACGGC AGTTCAACGA TTCGCCCACG CTGTCGGGCA CCAAGACCAC CAGCTTCAAG
ATCGAGGGCT CGCACCAGCT GTCGGACACC TGGCAGGTCA AGGGCAAGGT GCTGAGCGTG
CGCGGCGACA CCTCCGAGAT GGACGTGACG CCCTACCGCG TCGACCTGGG CGCCGGCATG
TCGCCGGGCG ACACCTGCTC GGGCTCGGGC AACCCGATGT GCCGGTACTA CTACTACGCG
CGGCCCAAGG GCAAATACAA GCTTGACCAG TTCAACGTCG ACCTCATCGG CAAGTTCGAC
ACCGGCGGCG TCAAGCACAC GGTGCTCATC GGCTTCGACA CCTACAACGG CCGCAAGAGC
GGCACCGCGT ACTTCCAGCA ACTGTCCGCG GTGGACATCT ACAACCCACT GCTCGGTGCA
ACGCCGAGGC TGGACACCGC GATGTCCTCG CCCCTGGACA TTCGCGACCA GAACCGCTGG
ACCAGCGTGT ACCTGCAGGA CCAGTTGGCC TTCGGCAACG GCGTGTTCCT GACCGGTGCG
TTGCGCCACG ACCGCACCAG CGCCGTGTAC GCCAGCGATG CGACCACGCC GCCGAACAAG
GCCTCGTTCA CCACGCCGCG CCTGGGCGCC GTGTGGCAGT TCGCGCCCAA CCAGGCGGTG
TATGCGCAGT ACCAGGACGC CGTTTCGGCC AACAACGGCC GCGACGCCGT GACCCAGGCG
GCGCTGAAGG CGGAAAAGGC CAGCCAGATC GAGATCGGCC ACAAGATCGA ACTCTTCGAC
GGCAAGCTCA GCTCGACGGT GGCGCTCTAC CAGCTCGTCA AGCGCAACCG CGCCGGGTCG
GTGCCCATCG ACACGGCGCC GTTCTACAAC ACCGTCACCA TCGGCAAGGC GCGCTCGCGC
GGCCTGGAGT GGGACGTGTC GGGCGAGATC ACCAAGCGGC TCTCGCTGAT CGGCTCCTAC
GCCTACACCG ACACCAAAGT CACCGAAGAC CCAACCTACG AGGGCAAGCA ACTCGCGAAC
GTCGCGCGCC ACACGACCAG CCTCTGGGCA CGCTATGCCT TCGACAGCCA GTGGAGCGGC
GGAGCGGGTG TGTTCGCGCA GAGCCGGCGC CAGGGCGATG TGGGCAACAC CTTCCAGTTG
CCGGGCTATG CGCGTGTCGA CGCGATGCTG GCCTACCGCT TCGCGTTGGG CAGCGCCAAG
GCGGCGCTGC AATTCAACAT CGACAACCTC TTCGGCAAGA AGTACTACAC GGGCAGCCAT
CAGTTCGTCT CGGACTGGAT CAAGCTGGGC ACGCCGCGCA CCGCCAGGCT GACGCTGCGG
CTGGACTACT GA
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| Protein sequence | MRSIFRLQPL AAALCTAGLS FGAGPALAQS SAQQSLPPVT VSADRDSYQA PESATATRTD
TPSLQNPQST QTVPLSVIQD QSALTLGDAL RNVAGVQFDF GFNGSAQPLA ILRGFPSASM
TAMGPMSGSS SYYIDGSKVT GVPINMANVQ SVEVIKGPSS VLYGRAEPGG LINVVTKPIS
SVPAFSFEQT VGQYGLSRTG IEASGPVNAD GTVRARVAAS YYNADSIRDY VTDKLGAFTG
SLAWVPDART SVTATIDYST QRYRTDYGVP AVGDRPANLP WSRQFNDSPT LSGTKTTSFK
IEGSHQLSDT WQVKGKVLSV RGDTSEMDVT PYRVDLGAGM SPGDTCSGSG NPMCRYYYYA
RPKGKYKLDQ FNVDLIGKFD TGGVKHTVLI GFDTYNGRKS GTAYFQQLSA VDIYNPLLGA
TPRLDTAMSS PLDIRDQNRW TSVYLQDQLA FGNGVFLTGA LRHDRTSAVY ASDATTPPNK
ASFTTPRLGA VWQFAPNQAV YAQYQDAVSA NNGRDAVTQA ALKAEKASQI EIGHKIELFD
GKLSSTVALY QLVKRNRAGS VPIDTAPFYN TVTIGKARSR GLEWDVSGEI TKRLSLIGSY
AYTDTKVTED PTYEGKQLAN VARHTTSLWA RYAFDSQWSG GAGVFAQSRR QGDVGNTFQL
PGYARVDAML AYRFALGSAK AALQFNIDNL FGKKYYTGSH QFVSDWIKLG TPRTARLTLR
LDY
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