| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2058 |
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| Symbol | |
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| ID | 7972460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2202029 |
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| End bp | 2202868 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792654 |
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| Product | phosphonate ABC transporter, inner membrane subunit |
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| Protein accession | YP_002943968 |
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| Protein GI | 239815058 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3639] ABC-type phosphate/phosphonate transport system, permease component |
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| TIGRFAM ID | [TIGR01097] phosphonate ABC transporter, permease protein PhnE |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.149072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAGA CCGAACCGCA ATCATCCGCC GCCAACGAGG TCTACCGGCT GCCGCCGCCG
CTGTTCGATG CGCGCTGCCG CGCCTGCTGG ATGGTCGCTG CGATGGTGGC GCTGGTGGTC
GCGAGCTTCT GGTCGCTCGA CCTGCAGTGG GCACGCTTCT TCTCGATCGA TTCGCTGGCC
CGCATGGGCC GCTTCGCCGG CGAGCTCACC AAGCCGGCCC TTGGTGCGGC CTTCCTGCAG
AAGCTGCTGC CGGCCGCGCT CGAGACGCTG GCGATGTCGG TGGTCGGCAC CTTGCTGGCC
GTCGTGGCCG GCCTGCTGCT CGCGCTGCCT GCGAGCAAGC TGCACGCCGG CGACCCGGCG
CGCTGGCGCG GCCCCACGCG GCTGCTGCTC AACGCCCTGC GCAGCGTGCC GGAACTGATG
TGGGCCGCGC TGCTGCTGAT AGCGGCCGGC CTCGGGCCTT TCGCGGGCAC GCTGGCGCTG
GCGGTGCACA CCTCCGGCGT GCTGGGCCGC CTGTTCGCCG AGAGCATCGA GAACGCGGCC
CAGGGCCCGG CCTTCGCGCT GCGCGTGCGC GGCGTGCCGG AAGGGCGGGT GTTCCTCTAT
GCGACGCTGC CGCAGGTGCT GCCGCAACTG ATGAGCTATG CGCTCTACCG GTGGGAGAAC
AACATCCGCG CCGCGGCCGT GCTGGGCGTG GTCGGCGCCG GCGGGCTGGG CCAGATGCTG
GCCTTCCACC TGGGGCTGTT CCAGATGCGC GAGACCAGCG CGGTGCTGCT CGCGATGATC
GTGCTGGTCG CGCTGGTGGA TGCTGCGAGC TACATCGCGC GGCGCCTGAT GGGGCGGTGA
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| Protein sequence | MPKTEPQSSA ANEVYRLPPP LFDARCRACW MVAAMVALVV ASFWSLDLQW ARFFSIDSLA
RMGRFAGELT KPALGAAFLQ KLLPAALETL AMSVVGTLLA VVAGLLLALP ASKLHAGDPA
RWRGPTRLLL NALRSVPELM WAALLLIAAG LGPFAGTLAL AVHTSGVLGR LFAESIENAA
QGPAFALRVR GVPEGRVFLY ATLPQVLPQL MSYALYRWEN NIRAAAVLGV VGAGGLGQML
AFHLGLFQMR ETSAVLLAMI VLVALVDAAS YIARRLMGR
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