Gene Vapar_2057 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2057 
Symbol 
ID7972459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2201176 
End bp2202015 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content71% 
IMG OID644792653 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002943967 
Protein GI239815057 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3639] ABC-type phosphate/phosphonate transport system, permease component 
TIGRFAM ID[TIGR01097] phosphonate ABC transporter, permease protein PhnE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0800707 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGCCG TCCCGTCACG CACAACACCG GCCGAGCGCG ACCCCGCCTG GGCGCACCGC 
GTGTTCTGGC TGCTGGCCGC GGCCGTGGTG CTGTGGCCGA TGCTCGTGCT GACCGAATTC
AAGCCCTGGC TGCTGCTGGC GCCCGGCGGC ATGGAGCCGG CACTGCAATT TCTGGCCGGC
TTCGTGCCGC CGCGCATGGA CGCGGAGTTC CTGGCGCTGG TGGCGCGGGA AACCTGGCGC
ACGGTGGCCA TTGCCACGGC CGGGCTCACG CTGGCCATGG TGCTGGCGGT TCCGCTCACG
CTGCTGTCGG TGCGCTCGCT CTCCATCTCC GGCTTGGCCG GCCGCATGGC GGCGCTGCCG
GCGGTGCTGC GCTTTTCGGT GCGCGGCCTG CTCATCGTGC TGCGCAGCGT GCCGGAACTC
ATCTGGGCGC TGGTGTTCGT GCGCGTGGTC GGGCTGGGCG TCACGGCCGG CGTGCTGGCC
ATCGCGCTGA CCTATGCCGG CATGCTGGGC AAGGTCTACG GCGAGATACT GGAGAGCGGC
GATGCCCATC CGACCGAGAC GCTGCTGCGC AACGGCGCCG GCCGCATCCA GGCCTTTTTC
TACGGCCTGC TGCCGCAGAA CGCGGCCGAG CTCACCAGCT ACACCGTCTA TCGTTGGGAG
TGCGCCATCC GCTCGTCCGC GGTGCTCGGC TTCGTGGGCG CGGGCGGGCT CGGCCAGCAG
ATGGATGCGT CGATGAAGAT GTTCAACGGC GCCGAGGTCA GCACCATGCT GCTGGTGTTC
GTGCTGCTGG TCGCGGCCAC CGACCGGCTG AGCGCCTGGC TGCGGCGCGC CCTGGCCTGA
 
Protein sequence
MAAVPSRTTP AERDPAWAHR VFWLLAAAVV LWPMLVLTEF KPWLLLAPGG MEPALQFLAG 
FVPPRMDAEF LALVARETWR TVAIATAGLT LAMVLAVPLT LLSVRSLSIS GLAGRMAALP
AVLRFSVRGL LIVLRSVPEL IWALVFVRVV GLGVTAGVLA IALTYAGMLG KVYGEILESG
DAHPTETLLR NGAGRIQAFF YGLLPQNAAE LTSYTVYRWE CAIRSSAVLG FVGAGGLGQQ
MDASMKMFNG AEVSTMLLVF VLLVAATDRL SAWLRRALA