| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2055 |
|---|
| Symbol | |
|---|
| ID | 7972457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2199472 |
|---|
| End bp | 2200329 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792651 |
|---|
| Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
|---|
| Protein accession | YP_002943965 |
|---|
| Protein GI | 239815055 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.065858 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCG CTGTCTTGCC GCGCTTCGTG CTGGCGCTGG CCCTGCTGGC CGGTGCCATC
GCCGCGCAGG CCCAACAAAC CTTCCGCATC ACCGCGATCC CCGACGAATC GCCCACCGAG
CTCGCGCGCA AGTCGGCGCC GCTGGCCGCC TACCTGGAGC GCAAGCTGGG CGTGAAGGTC
GAATTCACGC CGGTCACCGA CTACGCCGCC GCCGTCGAGG CCCTGGCCAA CAAGCAGGTC
GACCTGGCCT GGCTCGGCGG CTTCACCTTC GTGCAGGCCA GCCATCGTTC GGGCGGCAAG
GTGGTGCCGC TGGTGCAGCG CGAGGAAGAC GAGAAATTCC GCTCGGTGTT CATCACGACG
AATCCGGACA TCCGCTCGCT CGCCGACCTC AAGGGCCGCA ACCTGAGCTT CGGCTCGCAG
TCCAGCACCT CGGGCCACCT GATGCCGCGC AGCTTCCTGC TGGCGGCCGG CATCGACCCC
GACCGCGACC TCAAGCGCGT GGCCTATTCC GGCGCGCACG ATGCCACGGT GGCCGCAGTG
GCATCGGGCA AGGTGGACGC CGGGGCGCTC AACATCTCGG TGTGGGACAA GCTCGTGGCC
GACAAGAAGG TCGATCCGGC GAAGGTGCGG GTGTTCTACA CCACGCCCGC CTACTACGAC
TACAACTGGA CCGTGCATGC CGACATGCCG GCCGCCCGGC GCGAGCAGCT GGTGCGCGCG
TTCATCGAGC TGAGCCCGGC CACGCCTGAA GGCAAGGACA TCCTCGCGCT GCAGCGTGCC
ACGCGCTTCG TGCCGACGCG CGCCGAGAAC TACAAGGGCA TCGAAGCCGC GGCGCGCAAC
GCCGGGCTGC TGAACTGA
|
|---|
| Protein sequence | MKFAVLPRFV LALALLAGAI AAQAQQTFRI TAIPDESPTE LARKSAPLAA YLERKLGVKV
EFTPVTDYAA AVEALANKQV DLAWLGGFTF VQASHRSGGK VVPLVQREED EKFRSVFITT
NPDIRSLADL KGRNLSFGSQ SSTSGHLMPR SFLLAAGIDP DRDLKRVAYS GAHDATVAAV
ASGKVDAGAL NISVWDKLVA DKKVDPAKVR VFYTTPAYYD YNWTVHADMP AARREQLVRA
FIELSPATPE GKDILALQRA TRFVPTRAEN YKGIEAAARN AGLLN
|
|---|
| |