Gene Vapar_2048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2048 
Symbol 
ID7972450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2191910 
End bp2193700 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content72% 
IMG OID644792645 
Productacetolactate synthase, large subunit, biosynthetic type 
Protein accessionYP_002943959 
Protein GI239815049 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 
TIGRFAM ID[TIGR00118] acetolactate synthase, large subunit, biosynthetic type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.979203 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACTGC TCGACCTTCC CCTCACGCCT TCCCCGTCCC TCCATCCCGA AGTCCCAGGC 
GCCGCCTTCC GCGTGCGCAA CGGCGCCGAG GCCCTGCTCG ACACGCTGGT CGAGTGCGGC
GTCGACACCA TCTTCGGCTA CCCGGGCGGC GCCGCGCTGC CGCTGTACGA CGCGCTGCAT
GGCGAACCGC GGCTGCGCCA CGTGCTGGTG CGCCATGAGC AGGCCGCGGT GCATGCGGCC
GAGGGCTATG CGCGCAGCAC GGGCCGCGTG GGCGTGGTGC TGGTCACCTC GGGGCCGGGC
GTGGGCAACA CCATCACGGG GCTGCTCGAT GCCATGAGCG ATTCGGTGCC GGTGCTCTGC
ATCAGCGGGC AGGTCGCGAC CGCGGTGATC GGCACGCAGG CCTTCCAGGA GAGCGATGCG
CTGGGCATGT CGCGCCCCGT CACCAAGTGG AACCAGCAGG TGCGCGCGGC GGACGACGTG
CCTTCGCTGG TGCGCCGCGC GCTGGAGATC GCCGCCTCGG GCCGGCCGGG GCCGGTGCTG
CTCGACGTGC CGAAGGATGT CCAGCTCGCG CGCCTCGCGC ATGGCACTGC GCCAAAGCCG
CTGAGGGCGC TGCGCACGGG CAGGGCGGCG CTGCCGCCGA AGGCCATGCT GCAGCGCGCG
GCCGACCTGC TCTCGACCGC GCGCCGGCCG GTGCTCTACG GCGGCGGCGG GCTGATCAAC
TCGGGGCCGG CCGCCTGCGA GGCCTTCGCG CAGCTGGTGC AGCGCCTGCA TGCGCCGTGC
ACGCTCACGC TGATGGGGCT CGGCGCCTTC CCCGCGTCCG ACCCCAAATT CATCGGCATG
CTGGGCATGC ACGGGATGCT AGAAGCCAAC CTTGCGATGC ACGAGGCCGA CCTGGTGGTG
TGCGTCGGTG CGCGCTTCGA CGACCGCGTG ACGGGCAAGC TCGACGAGTT CTGTCCGCAT
GCGCGCAAGA TCCACATCGA TATCGACCCC GGCAGCATCA ACAAGGTGGT GATGGTCGAT
GTGCCGATGG TGGGCGACTG CGCCGCGATC CTCGATGCCG TGCTCGCGCT GCTGCCGGCC
GAAGGCCTTG CGCCCGAACG GCTCGCGCCC TGGTGGGAGC GGATCGAGCG CTGGCGCGCG
CAAGAGTGCC TGCGCTTCGC GCCGCGTGGC GACGCCATCC TGCCGCAGCA GCTGATGTCG
TCGCTGCAGC GCGCCATCGC GGGCCGCGAC GCGATCGTCT CCACCGACGT GGGCCAGCAT
CAGATGTGGG CCGCGCAGTA CCTGCGCTTC GACCGCCCGC GCCGCTGGCT CACCTCGGGC
GGCGCCGGCA CCATGGGCTA CGGGCTGCCC GCGGCCATCG GCGCGCAGAT CGGCCACCCC
GATGCGCTGA CGGTCTGCGT GAGCGGCGAC GCCTCGGTGC TCATGAACAT CCAGGAGCTG
TCGACGGCGG TGCAGCACCG CGCGCCGGTG AAGCTGGTGC TGTGCAACAA CGGCTACATG
GGCATGGTGC GGCAGTGGCA GGAGCTCAAC CACGGCAACC GGCTGAGCCA CAGCTGGAAC
GAGGCGCTGC CCGATTTCGT GGCGCTGGCC AAGGCCTTCG GCTGGGGCGC GCGCCGCGTG
TCGGACCCCG CCGAACTCGA AGCCGCGCTG GCCGAATGCC TGGCCAGCGA AGGCCCGTTC
TTCCTCGACG TGCAGGTCGC CGCGCAGGAA AACTGCTTTC CGATGATGCC GGCCGGGCAG
GGGCACCACC GCGTGATGCT GGCGAAGGAC CGCTGGTACG AGGAAGCCTA G
 
Protein sequence
MRLLDLPLTP SPSLHPEVPG AAFRVRNGAE ALLDTLVECG VDTIFGYPGG AALPLYDALH 
GEPRLRHVLV RHEQAAVHAA EGYARSTGRV GVVLVTSGPG VGNTITGLLD AMSDSVPVLC
ISGQVATAVI GTQAFQESDA LGMSRPVTKW NQQVRAADDV PSLVRRALEI AASGRPGPVL
LDVPKDVQLA RLAHGTAPKP LRALRTGRAA LPPKAMLQRA ADLLSTARRP VLYGGGGLIN
SGPAACEAFA QLVQRLHAPC TLTLMGLGAF PASDPKFIGM LGMHGMLEAN LAMHEADLVV
CVGARFDDRV TGKLDEFCPH ARKIHIDIDP GSINKVVMVD VPMVGDCAAI LDAVLALLPA
EGLAPERLAP WWERIERWRA QECLRFAPRG DAILPQQLMS SLQRAIAGRD AIVSTDVGQH
QMWAAQYLRF DRPRRWLTSG GAGTMGYGLP AAIGAQIGHP DALTVCVSGD ASVLMNIQEL
STAVQHRAPV KLVLCNNGYM GMVRQWQELN HGNRLSHSWN EALPDFVALA KAFGWGARRV
SDPAELEAAL AECLASEGPF FLDVQVAAQE NCFPMMPAGQ GHHRVMLAKD RWYEEA