Gene Vapar_2028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2028 
Symbol 
ID7969821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2172109 
End bp2172996 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content75% 
IMG OID644792625 
ProductHpcH/HpaI aldolase 
Protein accessionYP_002943939 
Protein GI239815029 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCACGG CAGCGCTCGC GCTGGCGCGC GCCTTTCTCT TCGTGCCGGC CGACCGGCCC 
GAGCGCCACG CGCGCGCGCT GGCCACCGGC GCGGGCGGGG TGATCGTCGA CCTGGAGGAT
GCGGTGGCGC CCGAGCGCAA GGCCGCGGCG CGCGAAGGCC TCGCGGCGTC GTTCGCCGCG
CTGCCCGCGG CCGGCCGGCA GCGCCTGCTG GTGCGCATCA ATGCCGCAGG CACGCCGTGG
CACGAGGACG ACTGCGCGGC CGTGGCCGGG CTGGTCTTGC AGGGGCTGAT TGCGGGCGTG
GTGCTGCCCA AGGCGGAGCG GGGCGGCGAC CTGCGGCTGC TGGCCGAAGC CATCGGCCCC
CGAGGCGTGC TCGTGCCGCT CGTCGAATCG GCGGCCGGGC TTGCGGCGGT TGATGAACTC
GCGGCGGCGC CACAGGTGCT GCGGCTCGCC TTTGGCAACC TCGATTTCCA GGCCGATGTC
GGGCTGGCCT GCGATGCGGA CGAAGCCGAG CTGGTGCCGG TGCGCCTCGC GCTGCTGCTG
GCCTCGCGCC GCGCCGGGCT GCCCGCGCCG ATCGACGGCG TGACGGCCGA CTGGCGCGAT
GCGCAACGCC TGGCCGCCGA CACCGCACGC GCGCGGCGCG GCGGCTTCGG CGCCAAGCTG
TGCATCCACC CCGACCAGGT TGCGCCGGTG CAGGCCGCGC TCGGCCCGAG CGACAGCGAG
CTCGCATGGG CGCGCCGCGT GATCGAGGCC GTGCGGTCGG CTGGCGGCGG CGTCGCCAGC
CTCGACGGCC GCATGGTCGA CGCGCCGGTG GTTCGCCTGG CCGAACGGCT GCAGGCGCTC
GCTGCGGAAC AAGACAGCCA TCCAACAACC AAGGAGACAA GCAAGTGA
 
Protein sequence
MSTAALALAR AFLFVPADRP ERHARALATG AGGVIVDLED AVAPERKAAA REGLAASFAA 
LPAAGRQRLL VRINAAGTPW HEDDCAAVAG LVLQGLIAGV VLPKAERGGD LRLLAEAIGP
RGVLVPLVES AAGLAAVDEL AAAPQVLRLA FGNLDFQADV GLACDADEAE LVPVRLALLL
ASRRAGLPAP IDGVTADWRD AQRLAADTAR ARRGGFGAKL CIHPDQVAPV QAALGPSDSE
LAWARRVIEA VRSAGGGVAS LDGRMVDAPV VRLAERLQAL AAEQDSHPTT KETSK