Gene Vapar_2019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2019 
Symbol 
ID7969812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2162700 
End bp2163341 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content67% 
IMG OID644792616 
Productmaleylacetoacetate isomerase 
Protein accessionYP_002943930 
Protein GI239815020 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0625] Glutathione S-transferase 
TIGRFAM ID[TIGR01262] maleylacetoacetate isomerase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.70314 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAGC TGCACAACTA CTTCCGATCC TCCTCGTCGT TCCGCGTGCG CATCGCGCTC 
CACCTGAAGG GCCTGGAGTT CGACTACATC CCGGTGCACA TCGCCCGCGG CGAGCACCGC
ACGGGGCCGT TCTCGGCCAT TTCGGCCGAC ATGCTGGTGC CCCTGCTCGA GGACGAGGGC
GAGCGCTTTT CGCAGTCGAT GGCCATCATC GAATACCTGG ACGAAACCCA CCCCGAGCCG
GCGCTGCTGC CGCACGATCC GGTGGGCCGC GCCCATGTGC GCGCGCTGGC GGAATCCATC
GCCTGCGAGA TCCATCCGCT CAACAACCTG CGCGTGCTCA AGTACCTGGT GAAGGAGCTC
AAGCTCGACG ACGAGGCCAA GAACGCCTGG TACCGCCATT GGGTGCGCGA CGGCATGCTG
GCCTTCGAGC GCCAGCTCGC GCAGCATCCC GGCGGCCGGT TCTGCTATGG CGACACGCCC
ACGCTGGCCG ACTGCTGCCT GGTGCCGCAG ATCTTCAACG GCCGCCGCTT CGACTGCGAC
TTCAGCGGGC TGCCGCGCAC CATGGCCGCC TTCGAGGCCT GCATGGAGCT CGACGCCTTC
CAGCGCGCCC AGCCTTCGCA GTGCCCCGAC GCGGAAGCCT GA
 
Protein sequence
MMKLHNYFRS SSSFRVRIAL HLKGLEFDYI PVHIARGEHR TGPFSAISAD MLVPLLEDEG 
ERFSQSMAII EYLDETHPEP ALLPHDPVGR AHVRALAESI ACEIHPLNNL RVLKYLVKEL
KLDDEAKNAW YRHWVRDGML AFERQLAQHP GGRFCYGDTP TLADCCLVPQ IFNGRRFDCD
FSGLPRTMAA FEACMELDAF QRAQPSQCPD AEA