| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2014 |
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| Symbol | |
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| ID | 7969807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2158558 |
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| End bp | 2160213 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792611 |
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| Product | phospholipase D/Transphosphatidylase |
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| Protein accession | YP_002943925 |
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| Protein GI | 239815015 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.384488 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGAAG ACTTCTCCTT CAATCCACGA CGTTCCGCCC CGCCAACCGG CCGGCTTGGC
CTGCGCTTGG CGCGCGCGCC CTGGCTGTTG CTGCTCGGCC TGGCCCTGCT GCTCCTGGGC
GGCTGCGCGG GGCTGCCGGC TGGGGTGGAG CGCAAGCCTT CGGTGGCCAT CACCGATGGC
GCCGACACCA TGCTGGGGCG CCTGGTGGCA GCGGCCTCGC CGCCGGGGCA GGGGCTGAGC
GGCTTCCGGC TGCTGCCGAT GCCGCAGTAT TCGCTGCATG CGCGCATCGA GCTCGCGCGC
CGCGCCCAGC GCTCGATCGA CGTGCAGTAC TACCTGGTGC AGAACGACGA AACCGGCCGC
TACCTGCTGC GCACGCTGCG CGACGCGGCC GACCGCGGCG TGCGCGTGCG CCTGCTGGTG
GACGATCTCT ACACCGCGGG CGCCGATCCG CTGTTCGCGG GCTTCGCGGC GCATCCGAAC
GTGGAGGTGC GCTTCTTCAA TCCCTTCCCG GCCGGCCGCG GCCTGCTGGG CACGCGCTGG
GCGGCGTCGC TGCTCGACTT CGACCGGGTG CACCGGCGCA TGCACAACAA GCTGTTCGTG
GTGGACAACA CGATGGCGGT CATGGGCGGG CGCAACATCG CCAACGAATA CTTCCTGCGC
GATGGCGGCT CCAACTTCAT CGACATCGAC ACGCTGGTGG CCGGCACGGT CGTGCCGCGG
CTGTCGTCGC TGTTCGACAT GTACTGGAAC AGCCCGTACG TCTACCCGAT CGAGTCGCTG
GTCTCCAATG GCGGGGCCAC GCCGCAGCAG CTGCGCGAAC GCTTCGAGCA GATGACTGCC
GGGCCGGACA CGCTGCATCC CGAGCCGCTG ACTTCCACCG ACCTGCTGGG CAACAACGCG
CTCGCCAAGG ACCTGGGCGA GGGTGCGCTG TCGCTGGTCT GGGCGCGCGC CGAAGCCTAT
GCCGATGCGC CCGCCAAGGC ACTCGGGCCG CCCGAAGCCC GCGGACTGCC GGCCGACGAA
TCGACCGACA GCGTGCTCTA CAACGTGCGG CGCTACCTGC GCGGAGCCCA GCAGGAGATC
CTGCAGACCA CGCCCTACCT GATTCCGGGG CGCGGCGGCA TGGAGACGAT CCGCCTCGTG
CGGCAGCGCG GCGTGAGCTA CACCATCGTG ACCAATTCGC TGGCCGCCAC GGACGAATCG
CTGGTGCACA TCGGCTATCG CCACTACCGG CCCGAAATGC TCGCCCTGGG CGTGGAGCTC
TACGAGCTGA GCCCCAAGCG CGTGGAGCAG ACCAAGCGCT TCGGCATCTA CGGTTCGGCC
AGTGGCCGGC TGCACGGCAA GTCGGCCGTG GTCGACCGCA GCATGGTGTT CATCGGCTCG
ATGAACTTCG ATCCGCGCTC GATGCTGCAC AACACCGAGA TCGGCCTGTT CATCTTCAGC
CCGCAGATTG CCCAGCAGCT CACCAGCCTG ATCGGTTTCA TCCGGCTGGA CGGCGCCTAC
CAGCTGCAGC TGGGGCCGCG CGGCGGCATC GAGTGGGTGA GCCCGGCCTC GGGCGATGGC
GCCGACACCA TCCTGCACGT GGAGCCGGAA ACGGATTTCT GGGCGCGCTG GAAGCTGGAG
CTGTTCGCCC CGCTGGTGCC CGAGAGCCTG CTGTAG
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| Protein sequence | MAEDFSFNPR RSAPPTGRLG LRLARAPWLL LLGLALLLLG GCAGLPAGVE RKPSVAITDG
ADTMLGRLVA AASPPGQGLS GFRLLPMPQY SLHARIELAR RAQRSIDVQY YLVQNDETGR
YLLRTLRDAA DRGVRVRLLV DDLYTAGADP LFAGFAAHPN VEVRFFNPFP AGRGLLGTRW
AASLLDFDRV HRRMHNKLFV VDNTMAVMGG RNIANEYFLR DGGSNFIDID TLVAGTVVPR
LSSLFDMYWN SPYVYPIESL VSNGGATPQQ LRERFEQMTA GPDTLHPEPL TSTDLLGNNA
LAKDLGEGAL SLVWARAEAY ADAPAKALGP PEARGLPADE STDSVLYNVR RYLRGAQQEI
LQTTPYLIPG RGGMETIRLV RQRGVSYTIV TNSLAATDES LVHIGYRHYR PEMLALGVEL
YELSPKRVEQ TKRFGIYGSA SGRLHGKSAV VDRSMVFIGS MNFDPRSMLH NTEIGLFIFS
PQIAQQLTSL IGFIRLDGAY QLQLGPRGGI EWVSPASGDG ADTILHVEPE TDFWARWKLE
LFAPLVPESL L
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