| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2012 |
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| Symbol | |
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| ID | 7969805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2156937 |
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| End bp | 2158361 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792609 |
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| Product | Homospermidine synthase |
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| Protein accession | YP_002943923 |
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| Protein GI | 239815013 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.50019 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAAGA AGAACGAAGC GCTGGCTCGC CTGGACGGCA AGCTCACGAT GATCGGCTTC
GGCTCCATCG GCCAGGCGCT GCTGCCTTTG CTGTTGCGCC ATTTCGGACT CAAGGCGGCG
GACATCAGGA TCGTGAAGCC GGGCGAAGAC CGCAGCGGCC TGGCAAAGCA GCTGGGCGTG
GAGATCATCC CGGTGCGGCT CGAGGAAGGC AACTTCGCCG CCGTGCTGGA GCCGCTGGTG
GACAAGGGCG ACTTCCTGGT CAACCTCTCG GTCGACGTGT CGAGCCTGGC GCTCATCAAG
CTCTGCCGCG AACGCGGCGC GCTCTACCTG GACACCTGCA ACGAGCCCTG GGGCGGCCGC
TACGACGATC CCGCGCTTCC GCCTTCGCGC CGCTCGAACT ACAGCCTGCG CGAAGAGGTG
CTGGCCTGGC GCCTGGACAA GCGCAGCGGG CCCACGGCAG TGATCACGCA GGGCGCGAAC
CCGGGGCTGG TCTCGGCGCT GCTCAAGCAG GCACTGCTGA ACATCGCGGC CGACACGCAT
GCCGAGCTCG AAGCCATGCC GTCGAGCTAC GAGGACTGGG CAGCGCTCGC GCAGCAGCTG
GGCATCAAGG TGGTGCACAT CGCCGAGCGC GACACCCAGG TTGCGAAGGA GCGCAAGCAG
CGCGGCGAGT TCGTCAACAC CTGGTCGGTG CAGGGCTTCG CCGACGAGGG CCTGCAGCCC
GCCGAGCTGG GCTGGGGAAC GCACGAGCGG CACTGGCCGG CCGATGCCGC GCGGCACGGC
TTCGGCAGCG ATGCGGCCAT CTACCTGAAA CGCCCCGGCA TCGGCACGCG GGTGCGCAGC
TGGACGCCGC TGGAAGGCCC CTACCACGGC TTCCTGGTGA CGCATGCCGA ATCGATTTCC
ATTGCCGACC ACCTGACGCT GCGCAAGGAC GGCCAGGTGG TGTACCGCCC CACGGTGCAC
TACGCCTATC ACCCGTGCGA CGACGCCGTG CTCTCGCTGC ACGAGATGGC GGGAAAGAAC
TGGCAGCTGC AGCACCGCCA GCGGATCGTG CGCGACGAGA TCGCCGAAGG CATGGACGAG
CTAGGCGTGC TGCTGATGGG CAACCCCAAG GGGGCCTACT GGTACGGCTC GCGGCTCACC
ATCGAGCAGG CGCGCGAACT GGCGCCCGCC AACAGCGCCA CCAGCCTGCA GGTGGTGGCC
GGCATCCTGG GCGGCATGTC GTGGGCGCTG CGCCATCCCG ACGCGGGCCT TGTGGAGCCG
GACGACCTGG ACCACCGCGT GGTGCTGGAA GCCGCCATGC CCTACCTCGG AGAAGTGGCG
GGCGTGTATG GCGACTGGAC GCCGCTGAAG GAACGCAGCC CGCTCTTCGA CGAGGAGAAG
GACGAAGACG ACCCCTGGCA GTTCATCAAC TTCCGGGTGG CCTGA
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| Protein sequence | MTKKNEALAR LDGKLTMIGF GSIGQALLPL LLRHFGLKAA DIRIVKPGED RSGLAKQLGV
EIIPVRLEEG NFAAVLEPLV DKGDFLVNLS VDVSSLALIK LCRERGALYL DTCNEPWGGR
YDDPALPPSR RSNYSLREEV LAWRLDKRSG PTAVITQGAN PGLVSALLKQ ALLNIAADTH
AELEAMPSSY EDWAALAQQL GIKVVHIAER DTQVAKERKQ RGEFVNTWSV QGFADEGLQP
AELGWGTHER HWPADAARHG FGSDAAIYLK RPGIGTRVRS WTPLEGPYHG FLVTHAESIS
IADHLTLRKD GQVVYRPTVH YAYHPCDDAV LSLHEMAGKN WQLQHRQRIV RDEIAEGMDE
LGVLLMGNPK GAYWYGSRLT IEQARELAPA NSATSLQVVA GILGGMSWAL RHPDAGLVEP
DDLDHRVVLE AAMPYLGEVA GVYGDWTPLK ERSPLFDEEK DEDDPWQFIN FRVA
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