Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2005 |
Symbol | |
ID | 7969798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2150291 |
End bp | 2151070 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644792603 |
Product | hypothetical protein |
Protein accession | YP_002943917 |
Protein GI | 239815007 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.878418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCGA CACGACATAA CTTCATAGAC ATATCCGTAG ACGGCCAGCA CATTGCCGGA ACGCTGGTTG CCGCCTCCAC GATGGTGCCC GGCGTTCTCC TGGTCCATGG CTGGGATGGC AGCCAGGAGC AGTACATCGC GCGCGCGCAC GAGATTGCCG CGCTCGGCTG CGTCTGCCTC ACCTTCGACC TGCGCGGCCA TGCGCGCCAT GCCTCGCTGC GCCAGGAGGT CACGCGCGAG GACAACCTGC GCGACGTGCT CGCGGCCTAC GACACGCTCA TCAGCCACCC CACCGTCGAC CCGCAGGCCA TTGCCATCGT CGGCAGCAGC TACGGCGGCT ACCTGGCGGC GCTGGTCAGC ACCATGCGGC CGGTGCGCTG GCTCGCGCTG CGGGCGCCGG CGCTCTACCG CGACCGCGAG TGGCTCGCGC CCAAGGGCCA GCTGAGCCGG CCCGACCTCG TGGCCTACCG CCGCACCCTG GTGGGCCCGC GCGACAACCG GGCGCTCGCG GCCTGCGAGG CCTTCACGGG CGACGTGCTG ATCGTGGAAT CGGAGCACGA CCAGATCGTG CCGCACCCGG TCATCGAGAA CTACCTGGGT GCCTTCAAGC GCGTGCGCTC CGCGACCTAC CGCGTCATTT CGGGGGCCGA CCATGCGCTG TCGAAGCAGG CGCACCGCCA AGCCTATGGA CAACTCCTCG TCTCCTGGAT GACGGAGATG ACGCTGGGCG CCCGGGCGAC CGGCACCATG ACGCGGCCCG TCTCCGCGAG TCCCGCATAG
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Protein sequence | MTATRHNFID ISVDGQHIAG TLVAASTMVP GVLLVHGWDG SQEQYIARAH EIAALGCVCL TFDLRGHARH ASLRQEVTRE DNLRDVLAAY DTLISHPTVD PQAIAIVGSS YGGYLAALVS TMRPVRWLAL RAPALYRDRE WLAPKGQLSR PDLVAYRRTL VGPRDNRALA ACEAFTGDVL IVESEHDQIV PHPVIENYLG AFKRVRSATY RVISGADHAL SKQAHRQAYG QLLVSWMTEM TLGARATGTM TRPVSASPA
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