Gene Vapar_2005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2005 
Symbol 
ID7969798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2150291 
End bp2151070 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content69% 
IMG OID644792603 
Producthypothetical protein 
Protein accessionYP_002943917 
Protein GI239815007 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.878418 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGCGA CACGACATAA CTTCATAGAC ATATCCGTAG ACGGCCAGCA CATTGCCGGA 
ACGCTGGTTG CCGCCTCCAC GATGGTGCCC GGCGTTCTCC TGGTCCATGG CTGGGATGGC
AGCCAGGAGC AGTACATCGC GCGCGCGCAC GAGATTGCCG CGCTCGGCTG CGTCTGCCTC
ACCTTCGACC TGCGCGGCCA TGCGCGCCAT GCCTCGCTGC GCCAGGAGGT CACGCGCGAG
GACAACCTGC GCGACGTGCT CGCGGCCTAC GACACGCTCA TCAGCCACCC CACCGTCGAC
CCGCAGGCCA TTGCCATCGT CGGCAGCAGC TACGGCGGCT ACCTGGCGGC GCTGGTCAGC
ACCATGCGGC CGGTGCGCTG GCTCGCGCTG CGGGCGCCGG CGCTCTACCG CGACCGCGAG
TGGCTCGCGC CCAAGGGCCA GCTGAGCCGG CCCGACCTCG TGGCCTACCG CCGCACCCTG
GTGGGCCCGC GCGACAACCG GGCGCTCGCG GCCTGCGAGG CCTTCACGGG CGACGTGCTG
ATCGTGGAAT CGGAGCACGA CCAGATCGTG CCGCACCCGG TCATCGAGAA CTACCTGGGT
GCCTTCAAGC GCGTGCGCTC CGCGACCTAC CGCGTCATTT CGGGGGCCGA CCATGCGCTG
TCGAAGCAGG CGCACCGCCA AGCCTATGGA CAACTCCTCG TCTCCTGGAT GACGGAGATG
ACGCTGGGCG CCCGGGCGAC CGGCACCATG ACGCGGCCCG TCTCCGCGAG TCCCGCATAG
 
Protein sequence
MTATRHNFID ISVDGQHIAG TLVAASTMVP GVLLVHGWDG SQEQYIARAH EIAALGCVCL 
TFDLRGHARH ASLRQEVTRE DNLRDVLAAY DTLISHPTVD PQAIAIVGSS YGGYLAALVS
TMRPVRWLAL RAPALYRDRE WLAPKGQLSR PDLVAYRRTL VGPRDNRALA ACEAFTGDVL
IVESEHDQIV PHPVIENYLG AFKRVRSATY RVISGADHAL SKQAHRQAYG QLLVSWMTEM
TLGARATGTM TRPVSASPA