Gene Vapar_2002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2002 
Symbol 
ID7969795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2147832 
End bp2148440 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content70% 
IMG OID644792600 
Productisochorismatase hydrolase 
Protein accessionYP_002943914 
Protein GI239815004 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0995803 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCCTC CCCGCTCGCA CTCGCAGCCC CCCGCCCTCG CACCGGCTCC CGCCGCGGGC 
CACACGGCCC TCCTGATCAT CGACATGATC AGTTGCTGGG ACTTTCCCGA TGCCGAAAAG 
CTGTTGCCCG GCGCGCATTT CATTGCGGGG CGCATCGCAG CGCTGAAGGC GCGCTGCACG 
CGCGCCGGGG TGCCCGCCAT CTACGTCAAC GACAACCGCG GGCGCTGGCG CTCGGACTTT 
CCCAAGCTGG TGGAACTGTC GCTGGCCTCT GGAGGCGCCG GTGCCGAGAT CACCTCGACG 
CTGCTGCCCG AGGAAACGGA CTACTTCGTG CTCAAGCCCA AGCAGTCCGC TTTCTTCGCG 
ACGCCGCTCG AGCTGCTGCT CGCCTATCTC AAGGCCACGC GGCTGATCGT GACCGGCGTG 
GCCAGCGACC AGTGCATCTG GGCCACCGTG GCCGACGCGG GCATGCGCGA CCTCGAGGCC 
GTCGTTCCGC GCGATTGCGT CGCCTCGCAG ACGAGCGCAC GCAATGAGCG CTTCCTGCGC 
CAGGCGCAAG AGGCGCTGCG CGTCTCCACC ACGCCCGGGG CGCGCATCCG CCTGCCTGCG 
AAGCGCTGA
 
Protein sequence
MAPPRSHSQP PALAPAPAAG HTALLIIDMI SCWDFPDAEK LLPGAHFIAG RIAALKARCT 
RAGVPAIYVN DNRGRWRSDF PKLVELSLAS GGAGAEITST LLPEETDYFV LKPKQSAFFA 
TPLELLLAYL KATRLIVTGV ASDQCIWATV ADAGMRDLEA VVPRDCVASQ TSARNERFLR 
QAQEALRVST TPGARIRLPA KR