| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1999 |
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| Symbol | |
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| ID | 7969792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2144995 |
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| End bp | 2146776 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792597 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_002943911 |
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| Protein GI | 239815001 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0409327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA CAGTCAGCGA TTTCGTGGTC CAGCGCCTGC ACGACTGGGG CGTGCGGCGC
GTCTACGGCT ACCCCGGCGA CGGCATCAAC GGCCTCATGG GCGCACTCGA CCGGGCGGAC
GGCGCCATCG AGTTCATCCA GAGCCGCCAT GAGGAACTGG CCGCCTTCAT GGCCTGTGCG
CATGCCAAGT TCTCGGGCGA GGTGGGCGTC TGCCTGGCCA CCTCGGGACC GGGCGCGATC
CACCTGCTGA ACGGCCTGTA CGACGCGAAG CTCGACCGCC AGCCGGTGGT CGCCATCGTC
GGCCAGCAGC AGCGCAGCGC GCTCGGCGGC GACTACCAGC AGGAGGTGGA TCTGGTTTCG
CTGTTCAAGG ACGTGGCGCA CGAGTTCGTG CAGATGGCCA CCAGCGCGGA GCAGGTTCGC
CACCTGGTCG ACCGCGCGAT GCGCATCGCG CGCGACCGCC GCGCCGTCAC CTGCGTGATC
GTCCCCAACG ACGTGCAGGA GCTGCCGGCG GTGCCGGTGC CGCCGCGCAA GCACGGCACC
GTGCACAGCG GCATCGGCAG CACGGCCAGC GCCGCGGTGC CGAACGCCGC GGCGCTGGGG
CAGGCGGCGG ACATCATCAA CGCGGGCAGC AAGGTGGCCA TCCTGGCGGG CGCGGGCGCC
CTGCATGCCA CCGATGAGCT GATCCATGCG GCCGAGCGGC TCGGCGCCGG CATTGCCAAG
GCGCTGCTCG GCAAGGCGGC GGTGCCCGAC GATCTGCCCT TCGTGACCGG CGCCATCGGC
GTGCTCGGCA CGCGGCCCAG CTCGCGCATG ATGGAAGACT GCGACACCTT GCTGATGGTG
GGCTCGTCGT TCCCGTACGC GGAATTCCTG CCGCCCGAAG GGCAGGCCCG CTGCGTGCAG
ATCGACACCG ACCCGCGCGC CATCGGGCTG CGCTACCCCA CGGAGCTGGG CCTGGTCGGC
GACAGCCGCG CCACGCTCGC GGCGCTGCTG CCGCTGCTCG ACCACAAGGA ACACGGTGCC
TGGCGCCAAG GCATCGAGGC CGACGTGGCG CGCTGGTGGC GCGTGCTCGA GGCGCGCGCG
CATGTGGAGG CCTCGCCGGT CAATCCGCAG CGCGTGTTCT GGGAGCTGTC GCCGCGCCTG
CCCGAAGAAA CGGTGCTCAC CTGCGACAGC GGCACCGCCG CCAACTGGTA CGCGCGCGAC
GTCAAGCTGC GCCGCGGCAT GAAGGCCAGC CTGTCCGGCG GCCTCGCCAC CATGGGCCCG
GCCCTCCCCT ACGCGATTGC GGCCAAGCTG GTGCATCCCG ACCGGCCCGT GGTCGCGATG
CTGGGCGACG GCGCCATGCA GATGAACGGC CTCAATGCGC TCATCACCCT GGCGCGCATG
TGGCGCGACT GGGCCGATCC GCGCCTGGTC GTCATGGTGC TCAACAACCG CGACCTCAAC
CTCGTGAGCT GGGAGCAGCG CGTGCTCGGC GGAGATCCGA AGTTCAACGC TTCGCAGGAG
CTGCCCGACT TTCCCTACGC GCGCTTCGCG CAGATGCTCG GCCTTGCGGC CCTGCGCGTC
GATACGCCAG AAGCCATCGG CCCGGCATGG GACGCCGCCT TTGCGGCCGA CCGCCCGATG
CTGCTGGAAA TGGTCACCGA CTCCGCCGTG CCGCCGCTGC CGCCCGATGT TTCGCTCGCC
CAGGCCAAGG CCTACCTGCT GGCCCTCTGG CAGGGCGACC CCGAAGCCAT GCGGACCATC
AAGGCCACCA TGCGGGAATA CTGGGCCAGC GCGACGGCGT GA
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| Protein sequence | MKKTVSDFVV QRLHDWGVRR VYGYPGDGIN GLMGALDRAD GAIEFIQSRH EELAAFMACA
HAKFSGEVGV CLATSGPGAI HLLNGLYDAK LDRQPVVAIV GQQQRSALGG DYQQEVDLVS
LFKDVAHEFV QMATSAEQVR HLVDRAMRIA RDRRAVTCVI VPNDVQELPA VPVPPRKHGT
VHSGIGSTAS AAVPNAAALG QAADIINAGS KVAILAGAGA LHATDELIHA AERLGAGIAK
ALLGKAAVPD DLPFVTGAIG VLGTRPSSRM MEDCDTLLMV GSSFPYAEFL PPEGQARCVQ
IDTDPRAIGL RYPTELGLVG DSRATLAALL PLLDHKEHGA WRQGIEADVA RWWRVLEARA
HVEASPVNPQ RVFWELSPRL PEETVLTCDS GTAANWYARD VKLRRGMKAS LSGGLATMGP
ALPYAIAAKL VHPDRPVVAM LGDGAMQMNG LNALITLARM WRDWADPRLV VMVLNNRDLN
LVSWEQRVLG GDPKFNASQE LPDFPYARFA QMLGLAALRV DTPEAIGPAW DAAFAADRPM
LLEMVTDSAV PPLPPDVSLA QAKAYLLALW QGDPEAMRTI KATMREYWAS ATA
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