| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1983 |
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| Symbol | |
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| ID | 7969776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2125689 |
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| End bp | 2127524 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792581 |
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| Product | malto-oligosyltrehalose trehalohydrolase |
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| Protein accession | YP_002943895 |
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| Protein GI | 239814985 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0236935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGTT TCCACCGCAT GCCGTTCGGC GCCACGGTGC GCGGCGATGG CGGCGTGGAC
TTTGCACTGT GGGCGCCGTC CATGCATGGC GTCACGCTCG TGCACACACC GGCGGGCGGG
AAGGAGGCCT CGCACGCCAT GGCGCAGGAC ACGGACGGCT GGCACCGCCT CACGCTCGCC
GATGCGCGCG CTGGCGACCT CTATGCCTAC CGGCTCGCCG ACGGCACCAC CATGCCCGAC
CCGGCCTCGC GCTTCAATCC GCAGGACGTG CACGGTCCGA GCCAGGTGGT CGATCCGGCC
CTCTACGAAT GGGCCGACAC CGCTTGGCGC GGCAGGCCCT GGCACGAGGC CGTGGTCTAC
GAACTGCACG TTGGCACCTT CACCGCGGAA GGCACCTTCC GGGCCGCGCG CGAGCGGCTC
GGCGAGCTGG CGGAACTGGG CATTACCGCG GTCGAGCTCA TGCCGCTCGC GGATTTTCCC
GGTGCGCGCA ACTGGGGCTA CGACGGCGTG CTGCAGTTCG CGCCCGACGC CAGCTACGGC
ACGCCCGACG AGCTCAAGGC CCTCGTCGAC AGCGCGCATG CGCTGGGGCT GATGGTGCTG
CTCGACGTGG TCTACAACCA CTTCGGGCCG GAGGGCAACT ACCTGCACGC CTGCTGCCCC
GAATTCTTCG ACGCGGCCCA GCACACGCCA TGGGGCGCGG CCATCAACTT CGACGGGCCG
GGCTCGCGCA CCGTGCGCGA CTTCTTCGTC CACAACGCGC TGTACTGGGT GAAAGAATTC
CACTTCGACG GCCTGCGCAT GGATGCGATC CATGCCATTC GCGATGCCTC GCCCAGGCAC
ATCGTGCAGG AGATCCGCGA GGCGCTGAAC GCCGGGCCGG CGCGCGAGCG GCAGGTGCAC
CTGGTGCTGG AGAACGACGC CAACCAGGCC TCGCTGCTGG CGCGCGACGG CAACGGCCTG
CCGGTGGCGG GCACCGCGCA ATGGAACGAC GACCTGCACC ACGCCGCCCA TGTGCTGGCC
ACCGGCGAGC GCGACGGCTA CTACGCCGAC TATGCCGACG ACGCCGCGGC CCGCTTTGCG
CGTGCGCTGG CCGAAGGCTT CATCTACCAG GGGCAGCCCT CGGCCTTTCG CGGCGGGGAG
CCGCGCGGCG AACCCAGCAC GCAGCTGCCG CCGACCGCTT TCGTGTCCTA CCTGCAGACC
CACGACCAGG TCGGCAACCG CGCGTTCGGC GAGCGCATCC ATGCGCTCGG CGATCCGGTG
CTGGTGCGCG CCGCGCTGGC CTGCGTGCTG CTGTCGCCAC ACGTGCCCAT GTTCTTCATG
GGCGACGAGT TCGCGGCTTC CTCGCCGTTC CTGTACTTCT GCGACTTCGG CCCCGAACTG
GCCTCGGCCG TGGCCGAAGG GCGCCGCGCA GAGTTCGGCC GCTTCGCCGC CTTTGCCGAC
GAAGCCGCGC GTGCGCGCAT TCCCGATCCC AATGCGGACC AGACCTTCCA AGCCTCGAAG
CTGCGCTGGC GCGAGCGCGG CACGCGGGCG CATTTCGCGC AGCTGTGCGA GGTGCAGCAA
TTGCTCGACG CGCGCCATCG GCTGCTGGTG CCGCACCTGG CCGGCGTGCG CGGCGCGGGA
AGCCATGGCT GCGAAGACGG GATGATCCGG GTTCAGTGGA AGCTCTCGGA CAAGCGCCTT
CATCTGCTTG CGAATCTTGG TGCGCAGCCT GCGGTGGAAG CAGCCGCGCC TGCGGGCACG
GTGCTCTACA GCAGGGGCGC CGTGGCCGCG GCGGCGGGCC TGCAGCTCGA GCGGGGCGCC
GTGCATGCGA CGCTGGAGGA CATCGCCGGT GGCTGA
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| Protein sequence | MKRFHRMPFG ATVRGDGGVD FALWAPSMHG VTLVHTPAGG KEASHAMAQD TDGWHRLTLA
DARAGDLYAY RLADGTTMPD PASRFNPQDV HGPSQVVDPA LYEWADTAWR GRPWHEAVVY
ELHVGTFTAE GTFRAARERL GELAELGITA VELMPLADFP GARNWGYDGV LQFAPDASYG
TPDELKALVD SAHALGLMVL LDVVYNHFGP EGNYLHACCP EFFDAAQHTP WGAAINFDGP
GSRTVRDFFV HNALYWVKEF HFDGLRMDAI HAIRDASPRH IVQEIREALN AGPARERQVH
LVLENDANQA SLLARDGNGL PVAGTAQWND DLHHAAHVLA TGERDGYYAD YADDAAARFA
RALAEGFIYQ GQPSAFRGGE PRGEPSTQLP PTAFVSYLQT HDQVGNRAFG ERIHALGDPV
LVRAALACVL LSPHVPMFFM GDEFAASSPF LYFCDFGPEL ASAVAEGRRA EFGRFAAFAD
EAARARIPDP NADQTFQASK LRWRERGTRA HFAQLCEVQQ LLDARHRLLV PHLAGVRGAG
SHGCEDGMIR VQWKLSDKRL HLLANLGAQP AVEAAAPAGT VLYSRGAVAA AAGLQLERGA
VHATLEDIAG G
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