| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1982 |
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| Symbol | |
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| ID | 7969775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2123527 |
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| End bp | 2125692 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792580 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_002943894 |
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| Protein GI | 239814984 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0850587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACGCA GCAGCCAACG CAATCCGATC TCGGCCGTCT GGCCGGGGCG CCCCTATCCG
CGGGGCGCCA ACTGGGACGG GGAGGGCGTG AACTTCGCGC TTTTTTCCCA GCACGCACAA
GGGGTGGACC TGTGCCTCTT CGACGACAAG GGCCGCCACG AAATCCAGCG CATCCCGATC
CGGGAGCGCA CCGACGGCGT ATGGCACTGC TACCTGCCCG AAGCCCGCCC GGGCCAGGCC
TACGGCTACC GCGTGCACGG CCCCTACAAG CCCGAGGAGG GCCACCGCTT CAACCCGCAC
AAGCTGCTGG TCGATCCCTA CGCAAAAGAC CTGGTGGGCG AACTGCGCTG GGGCGATGCG
CTCTACGGCT ACACGGTCGG CAGCAAGCGC GAAGACCTCT CGTTCGACCG CCGCGACAGC
GCGCCGCTGG TGCCCAAGGG CCGCGTGCTG GAGCCGGCCT TCACCTGGGG CGACGACCGC
CGGCCCTCGG TGCCCTGGCA GGACATGGTG ATCTACGAGC TGCACGTGCG CGGCTTCACC
ATGCGCCACC CCGACGTGCC GCCCGAGCTG CGCGGCACCT ACGGCGGCCT GTGCTGCGCG
CCCGTGGTCG ACTACCTCAA GCGCCTGGGC GTGACCACCA TCGAGCTGCT GCCGGTGCAC
AGCTTCCTCA ACGACCGGCA CCTGGCGGAG AAGGGCCTGC AGAACTACTG GGGCTACAAC
TCGCTGGCCT ACTTCGCCCC CGAGACGCGC TACAGCGCCT CGGGCAAGGT GAAGGAGTTC
AAGACCATGG TGAAGACGCT GCACTCGGCC GGCATCGAGG TGATCCTGGA CGTGGTCTAC
AACCACACCT GCGAAGGCAA CCAGCTCGGG CCCACCCTCT CGATGCGCGG CGTGGACAAC
GCCTCCTACT ACATCGTCAA CGCCGACAAC CGGCGCTACT ACGACGACTT CACCGGCTGC
GGCAACACCG TCAACCTGGA GCATCCGCAT GCGCTGCAGC TGGTGATGGA TTCGCTGCGC
TACTGGGCCG AGGAAATGCA CGTGGACGGC TTCCGCTTCG ACCTGGCCTC GGCGCTCGCG
CGCGAGGCCG GCAAGGTCGA GAACCTGGGC GGCTTCTTCG ACGCCATCCG CCAGGACCCG
ACGCTCAACC GCGTCAAGCT CATCGCCGAG CCCTGGGACC TGGGCCACGG CGGCTACCAG
GTGGGCAACT TCCCGCTCGG CTGGGCCGAA TGGAACGACC GCTACCGCGA CGGCATGCGC
GGTTTCTGGA AGGGCGACCC GGGCGTGATC GGCGAGGTCG GCAAGCGGCT CACCGGCTCG
GAAGACCTGT ACGGCTGGTC GGGCAAGCGG CCCAACGCGA GCATCAACTT CATCACCGCG
CACGACGGCT TCACGCTCGA CGACCTGGTC TCCTACAACG ACAAGCACAA CGAGGCCAAC
GGCGAGGACA ACCGCGACGG CAGCAACCAC AACATCTCCT GGAACTGCGG CGCCGAAGGG
CCGACGGAGG ACCCCGAGAT CGCCGCGCTG CGCGAGCGCC AGAAGCGCAA CCTGCTGGCC
ACGCTGCTGC TGTCGCAAGG CGTGCCGATG CTGCTGGCCG GCGACGAGCG CGGCCACACG
CAGAACGGCA ACAACAACGC CTACTGCCAG GACAACGACA TCAGCTGGCT CGACTGGACG
CCCACGCCCG AGCGGCAGGC GCTGATCACC TTCGTGGAGC GCACCATCGC GCTCAGGCGC
GCCCACCCCT CGTTCCGGCG CCGCAGCTTC TTTGCCGGCA AGCCCTCGGA GGCCGAGAGC
GTGACCGACG TGGTCTGGCT GCGGCCCGAC GGCGCCGAGA TGCGCCCCGA GGACTGGAGC
GACGCCAACG CGCGCTGCCT GGCGATGTAC ATGTCCGGCG GCGGCATTGC CGACCGCGGG
CCGCGCGGCG AGGCGCTGCA CGACGATGAT TTTCTGGTGC TGTTCAACGC GCACCACGAC
GAGATCCCGT TCACCCTGCC GCCCGCTCCC TATGGCGCGT GGCGGCTGCT GCTCGACACC
GCCAGCGGCA CCCCGCCGCC CGCCACCGAG GACGTGGCCG CGCTCGCGCC CGCCTGGTCC
GAGCCCGCCT ATCCGCTGCA GTGCCGCTCG CTAGTGGTGC TGAGCCGGCC GGACGTGCGG
CCATGA
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| Protein sequence | MTRSSQRNPI SAVWPGRPYP RGANWDGEGV NFALFSQHAQ GVDLCLFDDK GRHEIQRIPI
RERTDGVWHC YLPEARPGQA YGYRVHGPYK PEEGHRFNPH KLLVDPYAKD LVGELRWGDA
LYGYTVGSKR EDLSFDRRDS APLVPKGRVL EPAFTWGDDR RPSVPWQDMV IYELHVRGFT
MRHPDVPPEL RGTYGGLCCA PVVDYLKRLG VTTIELLPVH SFLNDRHLAE KGLQNYWGYN
SLAYFAPETR YSASGKVKEF KTMVKTLHSA GIEVILDVVY NHTCEGNQLG PTLSMRGVDN
ASYYIVNADN RRYYDDFTGC GNTVNLEHPH ALQLVMDSLR YWAEEMHVDG FRFDLASALA
REAGKVENLG GFFDAIRQDP TLNRVKLIAE PWDLGHGGYQ VGNFPLGWAE WNDRYRDGMR
GFWKGDPGVI GEVGKRLTGS EDLYGWSGKR PNASINFITA HDGFTLDDLV SYNDKHNEAN
GEDNRDGSNH NISWNCGAEG PTEDPEIAAL RERQKRNLLA TLLLSQGVPM LLAGDERGHT
QNGNNNAYCQ DNDISWLDWT PTPERQALIT FVERTIALRR AHPSFRRRSF FAGKPSEAES
VTDVVWLRPD GAEMRPEDWS DANARCLAMY MSGGGIADRG PRGEALHDDD FLVLFNAHHD
EIPFTLPPAP YGAWRLLLDT ASGTPPPATE DVAALAPAWS EPAYPLQCRS LVVLSRPDVR
P
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