Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1981 |
Symbol | |
ID | 7969774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2122760 |
End bp | 2123500 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644792579 |
Product | TM helix repeat-containing protein |
Protein accession | YP_002943893 |
Protein GI | 239814983 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0913829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCGAT TTGGCATTCA CCTGGAGCCG CTGAACGCAA TGCTCTACCA GGTCGGGGCC TTCGTGCCCC GCCTGGCGAT TGCATTGGTG GTGGTGCTTG CCGGCTGGCT CATTGCCAAG GCCGCGCGCT TTGCGGTGAC CAAGGCGCTG CGCGCGATCA ACTTCAACGT GCTGACCGAG CGCGCGGGCC TGGACAACTT CCTGCGCCAG GGCGGCTGGC CGGGCGACAC CTGCAGCCTG TTCGGCGTGC TGGCCTATTG GCTGGTGATC TTTGCGGCAC TGCTGCTGGC GTTCAACGGC ATGGGCCTGA GCTACATCGC CGACCTGCTC GGGCGCGTCG TGTGGTTCGT GCCCAATCTC TTCGTGGCCC TTTTGGTGCT GGCCTTCGGT TCCTACTTTG CCCGCTTCGT GGGAGAGGCG GTGTCGAGCT ACTTCCGGGG CGCGCAGCTG CGCGACGCCA TGCTGCTGGG CCAGATCGCG CGCTACGCGG TCATGGCCTT CGTCATCCTG ATTGCGCTGG ACCAGGTCAA GGTGGGCGGC GACATCGTGC GCGAAAGCTT CCTGGTGATC CTGGCGGGCG TGGTGTTCGC GCTGGCGCTG GCCTTCGGCC TGGCGGGCAA GGATTGGGCG GCCGAGCAGA TCGAACGCTG GTGGCCGCGC CTGCCGAAGG ACGGCAGCGA CAGCAGCAGC GGCACGGCCA GGCCCAAGCC GAACCCGTTC GACGAGCGCC CGCCGCGCTG A
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Protein sequence | MDRFGIHLEP LNAMLYQVGA FVPRLAIALV VVLAGWLIAK AARFAVTKAL RAINFNVLTE RAGLDNFLRQ GGWPGDTCSL FGVLAYWLVI FAALLLAFNG MGLSYIADLL GRVVWFVPNL FVALLVLAFG SYFARFVGEA VSSYFRGAQL RDAMLLGQIA RYAVMAFVIL IALDQVKVGG DIVRESFLVI LAGVVFALAL AFGLAGKDWA AEQIERWWPR LPKDGSDSSS GTARPKPNPF DERPPR
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