Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1980 |
Symbol | |
ID | 7969773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2119372 |
End bp | 2122701 |
Gene Length | 3330 bp |
Protein Length | 1109 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792578 |
Product | trehalose synthase |
Protein accession | YP_002943892 |
Protein GI | 239814982 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0525025 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGCCC CTGTCTCCCA CATTGCGCTC GAAACGGTAG AGATCGACAT CAGCGACGAC CCGCTGTGGT ACCGCGATGC GGTGATCTAC CAGCTCAACG TCAAGGCGTT CTTCGACTCC AACAACGACG GCATCGGCGA CTTCAAGGGC GTCACGGCCA AGCTCGACTA CGTGAAGGAG CTGGGCGTCA ACACCATCTG GCTGATGCCC TTCTATCCAT CGCCGCTGCG CGACGACGGC TACGACATTT CGGCCTACGA AGACGTGAAC CCGCAGTACG GCACGCTGGA CGACTTCCGC GAGATGCTCG ACGCCGCGCA CGAGCGCGGG CTGCGGGTGA TCACCGAGCT GGTCATCAAC CACACCTCGA GCGACCACCC GTGGTTCCAG GCCGCGCGGC GCGCACCGGC CGGCTCGCCC GAGCGCGACT TCTACGTGTG GAGCGACACC GACCAGATCT ACCAGGGCAC GCGCATCATC TTCACCGACA CCGAGACCTC CAACTGGGCC TGGGACCCGG TGGCCAAGGC CTACTACTGG CACCGCTTCT TCAGCCACCA GCCGGACCTC AACTTCGACA ACCCCGCGGT GCTCGAAGCC ATCTTCAAGG TGATGCGCTT CTGGCTCGAC ATGGGCGTGG ACGGCTTCCG GCTCGACGCC ATTCCCTACC TGGTGGAGCG CGACGGCACC AGCAACGAGA ACCTGCCCGA GACCCACGCG GTGATCAAGC AGCTGCGCGC GGCCATCGAT GCGCAGTACA AGAACCGCTT CCTGCTGGCC GAGGCCAACA TGTGGCCGGA AGACGTGCGC GAGTATTTCG GCGATGGCGA CGAGTGCCAC ATGGCGTACC ACTTTCCGCT GATGCCGCGC ATGTACATGG CCATCGCGCA GGAAGACCGG CATCCCATCG TCGAGATCAT GCAGCAGACG CCCGACATTC CCGAGGGCTG CCAGTGGGCC ATCTTCCTGC GCAACCACGA CGAGCTCACG CTCGAGATGG TCACCAGCAA GGAGCGCGAC TACATGTACA CCATGTATGC CGCCGACCTG CGCGCGCGCA TCAACCTGGG CATCCGCCGG CGCCTGGCGC CGCTGATGGA AAACGACATC GACCGCGTGA AGCTCATGAA CGGCATGCTG CTGTCGATGC CCGGCTCGCC GATCATCTAC TACGGCGACG AGATCGGCAT GGGCGACAAC GTGTTCGTGG GCGACCGCAA CGGCGTGCGC ACGCCCATGC AGTGGAGCCC CGACCGCAAC GCCGGCTTCT CGCGCGCCGA TCCGCAGCGG CTGTACCTGC AGCCCATCAT GGACCCGATG TTCGGCTACG AGGCGCTCAA CGTGGAGGCA CAGGCGCGCG ACAGCAGCTC GCTGCTCAAC TGGACCAAGC GCATGCTGGC CGTGCGCAAG ACCAGCCACG CCTTCGGCCG CGGCAAGCGG CGCTTCCTGA AGCCGGGCAA CCGCAAGATC CTGGCCTACC TGAGCGAGTA CGACGAGGAC ATCATCCTCA CGGTGTTCAA CCTGTCTCGC GCCGCGCAGC CGGTGGAGCT GGATCTCTCG GCCTTCAAGG GCCGCGTGCC CATCGAGATG CTGGGCCGCG CGCCGTTTCC GCCCATCGGC GAGCTGCCCT ACCTGCTCAC GCTGGCCTCG TACGGCTTCT ACTGGTTCAG GCTCACTTCC GATGCCGAGA TGCCGAGCTG GCACCAGGAA GGCGTGGCGC TGCAGGAGTG GCCCACGCTG GTGCTGTTCG ACGGCTGGAC CAGCTTCTTC CGCGACCGCG TGATGCCCTG GCGCATCGGC ATGTCGGAGC GCATGCGCAA CCAGTTCGAG CTGGAGACGC TGCCGCGCCA CATCGAGATC CAGCGCTGGT ATGCATCCAA GGGCACCCCC ATCGAGCGCG CGCGCCTGGC GGACCACGTC ATCTGGGAGG CAGGCCCGCT CAGCTGGATG CTGCCCTTGC TCGAACTCGA TGGGCCGCCC GGCGGCGCCA CCTACTTCAT GCCGCTGGCA CTGGCCTGGG AAGAGCGCGA CGAGGAGCGC ATGGCCGGCG TCGCGCAGGC CGCGCTCGCC AAGGTGCGGC AACAGGCGCA GGTGGGGCTG ATGGGCGATG CGTTCTATGA CGAAGCCTTC TGCCGCGAAT TGGTGCTGGC CATCCGCAGC GGCATGGAAC TGGAAACCGC CCAGGGGCGG CTGCGCTTTC GCGCGACGGC GGCCTTTGCC GAAGTGGAGG CCGATATCGC CAGTCTGCCG ATCGGCCGGC CGAGCGGCGT GAGCAGCAAC ACCGTGGTCA CGCTCGACGA AACCCTGTTC CTCAAGGGCT ACCGCCACCT GCGCGAAGGC CTGAACCCCG AGCTGGAGAT GGGCCGCTTC CTGACCGAGG TGGCCAAATA TCCGCACTGC GTCCCGGTGC TGGGCGCGCT CGAATACACC GGCAACGACG GGCGCACCAT GACCCTGGCC ATGGTGCAGT CCTATGTGTC GAACCAGGGC GATGGCTGGG ACCACACGCT GGGCTACCTG GAGCGCTTCC TGCGCGACTT CGCCACCACC AACGGCGCGC TGCCGGACCC GATGGCCGTG CACGGCGGCT TTCTCGCGCT CATGGCCACG CTGGGCCGGC GCACCGCCGA GCTGCACCAG GCGCTTGCGC TGCGCACCGG CGCGGCGGCC TTCGATCCCG AGCCGCTGCT GGACAGCGAC ATCGCCCGCT ATGCGGAGCA GGCCCGCGCC GACGCCACCG CCACGCTGGC GCTGCTGCGC GAAAGGCTGG CCCAGCTGCC GGCGCCGGCG CAGCCCGATG CCCAGGCCCT TCTGGCCATG GAGGACGCGC TGCAGGGCTC CATCGCGGCG CGCAGGCCGC AGGCGCAAGG CGGCATCAAG AGCCGCTACC ACGGCGACCT GCACCTGGGG CAGGTGCTGC TGCGGGACAA CGACTTCGTG ATCATCGACT TCGAAGGCGA GCCCGCGCGC AGCTTCGACG AGCGCCGCGC CAAGGGCTCG CCGCTGCGCG ACGTGGCCGG CATGCTGCGT TCGTTCAACT ATGCGCGCTG GTCCGCGCTG CGCCGCGTTG CGCAGAGCGT GGAGGAGGCC GCCTACCTGG GGCCGCCCGC CGCGGCCTGG GAGCAGTCGG CACGCCAGGC CTTCCTGGAC GGCTACATGG AGGCCGGCGC GGGCGAGGAG GCCACCCGCA TCGACGCCGA CCTGCTCGCG CTGTTCGAGA CCGAGAAGGC GCTGTACGAG CTGCGCTACG AGCTCAACAA CCGCATCGAC TGGGCGCAGG TGCCGCTGAA CGGCGTGCTC GCGCTGCTGC AGGTGGAGCG GCCCGGTTGA
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Protein sequence | MNAPVSHIAL ETVEIDISDD PLWYRDAVIY QLNVKAFFDS NNDGIGDFKG VTAKLDYVKE LGVNTIWLMP FYPSPLRDDG YDISAYEDVN PQYGTLDDFR EMLDAAHERG LRVITELVIN HTSSDHPWFQ AARRAPAGSP ERDFYVWSDT DQIYQGTRII FTDTETSNWA WDPVAKAYYW HRFFSHQPDL NFDNPAVLEA IFKVMRFWLD MGVDGFRLDA IPYLVERDGT SNENLPETHA VIKQLRAAID AQYKNRFLLA EANMWPEDVR EYFGDGDECH MAYHFPLMPR MYMAIAQEDR HPIVEIMQQT PDIPEGCQWA IFLRNHDELT LEMVTSKERD YMYTMYAADL RARINLGIRR RLAPLMENDI DRVKLMNGML LSMPGSPIIY YGDEIGMGDN VFVGDRNGVR TPMQWSPDRN AGFSRADPQR LYLQPIMDPM FGYEALNVEA QARDSSSLLN WTKRMLAVRK TSHAFGRGKR RFLKPGNRKI LAYLSEYDED IILTVFNLSR AAQPVELDLS AFKGRVPIEM LGRAPFPPIG ELPYLLTLAS YGFYWFRLTS DAEMPSWHQE GVALQEWPTL VLFDGWTSFF RDRVMPWRIG MSERMRNQFE LETLPRHIEI QRWYASKGTP IERARLADHV IWEAGPLSWM LPLLELDGPP GGATYFMPLA LAWEERDEER MAGVAQAALA KVRQQAQVGL MGDAFYDEAF CRELVLAIRS GMELETAQGR LRFRATAAFA EVEADIASLP IGRPSGVSSN TVVTLDETLF LKGYRHLREG LNPELEMGRF LTEVAKYPHC VPVLGALEYT GNDGRTMTLA MVQSYVSNQG DGWDHTLGYL ERFLRDFATT NGALPDPMAV HGGFLALMAT LGRRTAELHQ ALALRTGAAA FDPEPLLDSD IARYAEQARA DATATLALLR ERLAQLPAPA QPDAQALLAM EDALQGSIAA RRPQAQGGIK SRYHGDLHLG QVLLRDNDFV IIDFEGEPAR SFDERRAKGS PLRDVAGMLR SFNYARWSAL RRVAQSVEEA AYLGPPAAAW EQSARQAFLD GYMEAGAGEE ATRIDADLLA LFETEKALYE LRYELNNRID WAQVPLNGVL ALLQVERPG
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