Gene Vapar_1980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1980 
Symbol 
ID7969773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2119372 
End bp2122701 
Gene Length3330 bp 
Protein Length1109 aa 
Translation table11 
GC content68% 
IMG OID644792578 
Producttrehalose synthase 
Protein accessionYP_002943892 
Protein GI239814982 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID[TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0525025 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCCC CTGTCTCCCA CATTGCGCTC GAAACGGTAG AGATCGACAT CAGCGACGAC 
CCGCTGTGGT ACCGCGATGC GGTGATCTAC CAGCTCAACG TCAAGGCGTT CTTCGACTCC
AACAACGACG GCATCGGCGA CTTCAAGGGC GTCACGGCCA AGCTCGACTA CGTGAAGGAG
CTGGGCGTCA ACACCATCTG GCTGATGCCC TTCTATCCAT CGCCGCTGCG CGACGACGGC
TACGACATTT CGGCCTACGA AGACGTGAAC CCGCAGTACG GCACGCTGGA CGACTTCCGC
GAGATGCTCG ACGCCGCGCA CGAGCGCGGG CTGCGGGTGA TCACCGAGCT GGTCATCAAC
CACACCTCGA GCGACCACCC GTGGTTCCAG GCCGCGCGGC GCGCACCGGC CGGCTCGCCC
GAGCGCGACT TCTACGTGTG GAGCGACACC GACCAGATCT ACCAGGGCAC GCGCATCATC
TTCACCGACA CCGAGACCTC CAACTGGGCC TGGGACCCGG TGGCCAAGGC CTACTACTGG
CACCGCTTCT TCAGCCACCA GCCGGACCTC AACTTCGACA ACCCCGCGGT GCTCGAAGCC
ATCTTCAAGG TGATGCGCTT CTGGCTCGAC ATGGGCGTGG ACGGCTTCCG GCTCGACGCC
ATTCCCTACC TGGTGGAGCG CGACGGCACC AGCAACGAGA ACCTGCCCGA GACCCACGCG
GTGATCAAGC AGCTGCGCGC GGCCATCGAT GCGCAGTACA AGAACCGCTT CCTGCTGGCC
GAGGCCAACA TGTGGCCGGA AGACGTGCGC GAGTATTTCG GCGATGGCGA CGAGTGCCAC
ATGGCGTACC ACTTTCCGCT GATGCCGCGC ATGTACATGG CCATCGCGCA GGAAGACCGG
CATCCCATCG TCGAGATCAT GCAGCAGACG CCCGACATTC CCGAGGGCTG CCAGTGGGCC
ATCTTCCTGC GCAACCACGA CGAGCTCACG CTCGAGATGG TCACCAGCAA GGAGCGCGAC
TACATGTACA CCATGTATGC CGCCGACCTG CGCGCGCGCA TCAACCTGGG CATCCGCCGG
CGCCTGGCGC CGCTGATGGA AAACGACATC GACCGCGTGA AGCTCATGAA CGGCATGCTG
CTGTCGATGC CCGGCTCGCC GATCATCTAC TACGGCGACG AGATCGGCAT GGGCGACAAC
GTGTTCGTGG GCGACCGCAA CGGCGTGCGC ACGCCCATGC AGTGGAGCCC CGACCGCAAC
GCCGGCTTCT CGCGCGCCGA TCCGCAGCGG CTGTACCTGC AGCCCATCAT GGACCCGATG
TTCGGCTACG AGGCGCTCAA CGTGGAGGCA CAGGCGCGCG ACAGCAGCTC GCTGCTCAAC
TGGACCAAGC GCATGCTGGC CGTGCGCAAG ACCAGCCACG CCTTCGGCCG CGGCAAGCGG
CGCTTCCTGA AGCCGGGCAA CCGCAAGATC CTGGCCTACC TGAGCGAGTA CGACGAGGAC
ATCATCCTCA CGGTGTTCAA CCTGTCTCGC GCCGCGCAGC CGGTGGAGCT GGATCTCTCG
GCCTTCAAGG GCCGCGTGCC CATCGAGATG CTGGGCCGCG CGCCGTTTCC GCCCATCGGC
GAGCTGCCCT ACCTGCTCAC GCTGGCCTCG TACGGCTTCT ACTGGTTCAG GCTCACTTCC
GATGCCGAGA TGCCGAGCTG GCACCAGGAA GGCGTGGCGC TGCAGGAGTG GCCCACGCTG
GTGCTGTTCG ACGGCTGGAC CAGCTTCTTC CGCGACCGCG TGATGCCCTG GCGCATCGGC
ATGTCGGAGC GCATGCGCAA CCAGTTCGAG CTGGAGACGC TGCCGCGCCA CATCGAGATC
CAGCGCTGGT ATGCATCCAA GGGCACCCCC ATCGAGCGCG CGCGCCTGGC GGACCACGTC
ATCTGGGAGG CAGGCCCGCT CAGCTGGATG CTGCCCTTGC TCGAACTCGA TGGGCCGCCC
GGCGGCGCCA CCTACTTCAT GCCGCTGGCA CTGGCCTGGG AAGAGCGCGA CGAGGAGCGC
ATGGCCGGCG TCGCGCAGGC CGCGCTCGCC AAGGTGCGGC AACAGGCGCA GGTGGGGCTG
ATGGGCGATG CGTTCTATGA CGAAGCCTTC TGCCGCGAAT TGGTGCTGGC CATCCGCAGC
GGCATGGAAC TGGAAACCGC CCAGGGGCGG CTGCGCTTTC GCGCGACGGC GGCCTTTGCC
GAAGTGGAGG CCGATATCGC CAGTCTGCCG ATCGGCCGGC CGAGCGGCGT GAGCAGCAAC
ACCGTGGTCA CGCTCGACGA AACCCTGTTC CTCAAGGGCT ACCGCCACCT GCGCGAAGGC
CTGAACCCCG AGCTGGAGAT GGGCCGCTTC CTGACCGAGG TGGCCAAATA TCCGCACTGC
GTCCCGGTGC TGGGCGCGCT CGAATACACC GGCAACGACG GGCGCACCAT GACCCTGGCC
ATGGTGCAGT CCTATGTGTC GAACCAGGGC GATGGCTGGG ACCACACGCT GGGCTACCTG
GAGCGCTTCC TGCGCGACTT CGCCACCACC AACGGCGCGC TGCCGGACCC GATGGCCGTG
CACGGCGGCT TTCTCGCGCT CATGGCCACG CTGGGCCGGC GCACCGCCGA GCTGCACCAG
GCGCTTGCGC TGCGCACCGG CGCGGCGGCC TTCGATCCCG AGCCGCTGCT GGACAGCGAC
ATCGCCCGCT ATGCGGAGCA GGCCCGCGCC GACGCCACCG CCACGCTGGC GCTGCTGCGC
GAAAGGCTGG CCCAGCTGCC GGCGCCGGCG CAGCCCGATG CCCAGGCCCT TCTGGCCATG
GAGGACGCGC TGCAGGGCTC CATCGCGGCG CGCAGGCCGC AGGCGCAAGG CGGCATCAAG
AGCCGCTACC ACGGCGACCT GCACCTGGGG CAGGTGCTGC TGCGGGACAA CGACTTCGTG
ATCATCGACT TCGAAGGCGA GCCCGCGCGC AGCTTCGACG AGCGCCGCGC CAAGGGCTCG
CCGCTGCGCG ACGTGGCCGG CATGCTGCGT TCGTTCAACT ATGCGCGCTG GTCCGCGCTG
CGCCGCGTTG CGCAGAGCGT GGAGGAGGCC GCCTACCTGG GGCCGCCCGC CGCGGCCTGG
GAGCAGTCGG CACGCCAGGC CTTCCTGGAC GGCTACATGG AGGCCGGCGC GGGCGAGGAG
GCCACCCGCA TCGACGCCGA CCTGCTCGCG CTGTTCGAGA CCGAGAAGGC GCTGTACGAG
CTGCGCTACG AGCTCAACAA CCGCATCGAC TGGGCGCAGG TGCCGCTGAA CGGCGTGCTC
GCGCTGCTGC AGGTGGAGCG GCCCGGTTGA
 
Protein sequence
MNAPVSHIAL ETVEIDISDD PLWYRDAVIY QLNVKAFFDS NNDGIGDFKG VTAKLDYVKE 
LGVNTIWLMP FYPSPLRDDG YDISAYEDVN PQYGTLDDFR EMLDAAHERG LRVITELVIN
HTSSDHPWFQ AARRAPAGSP ERDFYVWSDT DQIYQGTRII FTDTETSNWA WDPVAKAYYW
HRFFSHQPDL NFDNPAVLEA IFKVMRFWLD MGVDGFRLDA IPYLVERDGT SNENLPETHA
VIKQLRAAID AQYKNRFLLA EANMWPEDVR EYFGDGDECH MAYHFPLMPR MYMAIAQEDR
HPIVEIMQQT PDIPEGCQWA IFLRNHDELT LEMVTSKERD YMYTMYAADL RARINLGIRR
RLAPLMENDI DRVKLMNGML LSMPGSPIIY YGDEIGMGDN VFVGDRNGVR TPMQWSPDRN
AGFSRADPQR LYLQPIMDPM FGYEALNVEA QARDSSSLLN WTKRMLAVRK TSHAFGRGKR
RFLKPGNRKI LAYLSEYDED IILTVFNLSR AAQPVELDLS AFKGRVPIEM LGRAPFPPIG
ELPYLLTLAS YGFYWFRLTS DAEMPSWHQE GVALQEWPTL VLFDGWTSFF RDRVMPWRIG
MSERMRNQFE LETLPRHIEI QRWYASKGTP IERARLADHV IWEAGPLSWM LPLLELDGPP
GGATYFMPLA LAWEERDEER MAGVAQAALA KVRQQAQVGL MGDAFYDEAF CRELVLAIRS
GMELETAQGR LRFRATAAFA EVEADIASLP IGRPSGVSSN TVVTLDETLF LKGYRHLREG
LNPELEMGRF LTEVAKYPHC VPVLGALEYT GNDGRTMTLA MVQSYVSNQG DGWDHTLGYL
ERFLRDFATT NGALPDPMAV HGGFLALMAT LGRRTAELHQ ALALRTGAAA FDPEPLLDSD
IARYAEQARA DATATLALLR ERLAQLPAPA QPDAQALLAM EDALQGSIAA RRPQAQGGIK
SRYHGDLHLG QVLLRDNDFV IIDFEGEPAR SFDERRAKGS PLRDVAGMLR SFNYARWSAL
RRVAQSVEEA AYLGPPAAAW EQSARQAFLD GYMEAGAGEE ATRIDADLLA LFETEKALYE
LRYELNNRID WAQVPLNGVL ALLQVERPG