Gene Vapar_1979 details

Gene Information

• Locus tag: Vapar_1979
• ID: 7969772
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2117307
• End bp: 2119361
• Gene Length: 2055 bp
• Protein Length: 684 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644792577
• Product: alpha amylase catalytic region
• Protein accession: YP_002943891
• Protein GI: 239814981
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.379903
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAC TGTTCGCAAA TCCGCAGGCT CCCGCGGCTT CCTCCGTGGC GCCCGAGGTG 
CAGGACGGCA ACCGGCGCGC GGTCGTCGAT GCCGTGCTGC CGTCGGTGGA CAACGGCCGC 
TTCGCCGTGA AATGCATCGT CGGCGAAAGG GTGCAGGTGA AGGCGCACTG CTTCACCGAC 
GGCCACGATG TGCTGCGCGT GCTGCTGTGC TGGCGTCCGC AGGGCAAGGC CGAGTTCCGC 
GAAGTGCCGA TGAAGCCGCT GGTCAACGAC GTGTGGGAGG CATCCTTTGC GCCGCCCGCG 
CTCGGGCGCT ACTTCTACAC CGTGGTGGCC TGGGTCGACC CGTTCGAATC GTGGCGCCAT 
GAAATGACGC GCCGCGTGGA CCCCGACGAC GTGCGCATCG CGTCGCAGGT GGGCGCGCTG 
GAAGTGGCCG GCGCGGCCGA GCGGGCCGAG GGCGCGGACC GGCAGGCGCT GGCCAACTGG 
GCCACCGAGC TCGATGCCGT GGCGGCCGAC CCCGGCGCGG ACGTGTCGGC GCTCAAGGCG 
CTGGCGCTGG ACGAAGAGCT CGCCATGCTG GCGCGCCGCC ATCCCGACCG CCGGCACGAG 
GTGCGCTATT CGCTCGAACT GCCGCTGGAA GCCGAGCGCG AGCGTGCGCG CTTCAGCACC 
TGGTACGAGC TGTTCCCGCG CTCGGCCGGC ACAACGCCCG GCGTGCACGG CACCTTCAAG 
GACGTGGAGG CGCGGCTGCC CGCCATTGCC GCCATGGGCT TCGACGTGCT GTACTTTCCG 
CCGATCCACC CGATCGGCCG GCTGCAGCGC AAGGGCCCCA ACAACGCGCT GGCCAGCGGC 
GCGGACGACG TCGGCAGCCC CTGGGCCATT GGCGCGGCCG AGGGCGGCCA CAAGGCCATT 
CTTCCGGCGC TTGGCACGGC GGAAGACTTT CGCCACCTCT GCGCAGAGGC CGCCTCGCAC 
GGCCTGGAGA TCGCGCTGGA CATCGCCTTC CAGTGCGCCC CCGACCATCC CTATGTGAAG 
GCGCACCCCG ACTGGTTCCG CTGGCGCCCC GACGGCAGCG TGCAGTACGC GGAGAACCCG 
CCCAAGAAGT ACCAGGACAT CTACCCCTTC AACTTTGAGA GCGAGGACTG GCGCGGCCTG 
TGGGCTGAGC TGCGCAGCGT GATCGAGCAC TGGATAGGCG AGGGCGTGCG CATCTTCCGC 
GTCGACAACC CGCACACCAA GGCCTTCGCG TTCTGGGAAT GGGTGATCGG CGAGATCCGG 
CGCCAGCACC CGGAAGTGAT CTTCCTGGCC GAGGCCTTCA CGCGGCCCAA GGTGATGCAC 
CGGCTCGCGA AGCTGGGCTT CTCGCAGTCC TACACCTACT TCACCTGGCG CAACACCAAG 
CAGGAACTGG TCGAGTACTT CACCGAGCTT TCCACGCCGC CGGGCGTGGA CTACTTCAGG 
CCCAACGTGT GGCCCAACAC GCCCGACATC CTGCACGAGC AGCTGCAGGG CGGCGAAGCC 
TCGGTCTACA TGGCGCGGCT GGTGCTGGCC GCCACGCTCG CGGCCAACTA CGGCATCTAC 
GGGCCGGCCT ACGAGCTGCG CGAACACCGG CCGCGCTCGT CCGGCAGCGA GGAATACCTC 
GACTCCGAAA AATACCAGCT GCGCCACTGG AACCACGACG ACCCGGGCAG CCTGGCGCCG 
TTCATCACGC GCGTGAACCG CATCCGCCGC GAGAACCCGG CGCTGCACCG GGACCGCGGC 
CTGCGCTTCC TGCGCATCGA CAACGACCAG CTGCTGGCCT ATGCCAAGGT GTCGGAGGCC 
GGCGACAACG TGGTCGTGAC CGTGGTCAAC CTCGATCCGC ACAACGTACA GTCGGGCTGG 
CTCGAGCTCG ACCCCGAAAG CGTGAACGTC GAGCGTTCGC GCCCGTTCCA GATGCACGAC 
CTGCTGAGCG GGCAGCGCTT CATCTGGCAG GGCGGCTGGC ACTACGTCAA GCTCGATCCG 
CACAGCGTGC CCGCGCACAT CTTCGTGGTG CGGCGGCGCC ATGGCGACGA GCGCGACTTC 
GACTACTTCC TGTGA 

 

Protein sequence

MKKLFANPQA PAASSVAPEV QDGNRRAVVD AVLPSVDNGR FAVKCIVGER VQVKAHCFTD 
GHDVLRVLLC WRPQGKAEFR EVPMKPLVND VWEASFAPPA LGRYFYTVVA WVDPFESWRH 
EMTRRVDPDD VRIASQVGAL EVAGAAERAE GADRQALANW ATELDAVAAD PGADVSALKA 
LALDEELAML ARRHPDRRHE VRYSLELPLE AERERARFST WYELFPRSAG TTPGVHGTFK 
DVEARLPAIA AMGFDVLYFP PIHPIGRLQR KGPNNALASG ADDVGSPWAI GAAEGGHKAI 
LPALGTAEDF RHLCAEAASH GLEIALDIAF QCAPDHPYVK AHPDWFRWRP DGSVQYAENP 
PKKYQDIYPF NFESEDWRGL WAELRSVIEH WIGEGVRIFR VDNPHTKAFA FWEWVIGEIR 
RQHPEVIFLA EAFTRPKVMH RLAKLGFSQS YTYFTWRNTK QELVEYFTEL STPPGVDYFR 
PNVWPNTPDI LHEQLQGGEA SVYMARLVLA ATLAANYGIY GPAYELREHR PRSSGSEEYL 
DSEKYQLRHW NHDDPGSLAP FITRVNRIRR ENPALHRDRG LRFLRIDNDQ LLAYAKVSEA 
GDNVVVTVVN LDPHNVQSGW LELDPESVNV ERSRPFQMHD LLSGQRFIWQ GGWHYVKLDP 
HSVPAHIFVV RRRHGDERDF DYFL