| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1968 |
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| Symbol | |
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| ID | 7969761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2107331 |
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| End bp | 2108995 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792566 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_002943880 |
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| Protein GI | 239814970 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAACG ACCTTTGGTA CAAAAACGCC GTGGTGTATT GCCTCTCCGT GGGAACCTTC
ATGGACTCCA ACGGCGATGG CTGCGGCGAC TTCGAGGGGC TGACACGGCG GCTGGAGTAC
CTTCACGGCC TGGGTGTCAC GACCCTGTGG CTGATGCCCT TCCATCCATC GCCGAGGCAG
GACGACGGCT ACGATGTTTC GGACTTTTAC AACGTCGATC CCCGCTTCGG CACGCTCGGC
GATTTCGTCG AGTTCACGCA CTCGGCTTCG CGCCTTGGCA TGCGCGTGCT GATGGACCTG
GTGGTGAACC ACACCTCGGA CCAGCACCCG TGGTTCCAGC AGGCACGCAG GGACCGCAAG
TCAAAGTATC ACAACTGGTA TGTGTGGTCC GACAGGAAGC CGGCCCGCTA CACCGATGGT
GTGGTCTTCC CGGGCGTGCA GAAATCGACC TGGACCTTCG ACAAGCTCGC AAGGCGCTGG
TACTTCCACC GCTTCTACGA ATTCCAGCCC GACCTGAACA CCGCCAACCC CGACGTGCAG
GCCGAGATCC TGAAGATCAT GGGCTTCTGG ACCCAGATGG GCGTCTCGGG TTTCCGCATG
GACGCCGTGC CCTTCGTGAT CGGCGCCAAG GGCCCGAGGG TGGTGCGCCC GACCGAGAAG
TTCGACATGC TGCGGCAGTT CCGCGAACTG CTCCAGTGGC GCCGGGGCGA CGCGATCATC
CTCGCCGAGG CCAACGTGCT GCCCAGCACC AACATGGCCT ACTTCGGCGA CGAGGGCGAG
CGGCTGCACA TGATGTTCAA CTTCCAGGTC AACCAGCACC TCTTCTATGC GATGGCCGTG
GCCGACGCGC GGCCGCTGGC CAAGGCGCTG GAGGCGACCC GGGCGCGCCC CGCGACCTCG
CAGTGGGGCA TCTTCCTGCG CAACCACGAC GAGCTCGACC TGGGCCGCCT GCGGCCCGCA
CAGCGCCAGC GCGTGTTCGC CGCCTTCGGC CCCGAAAAGG ACATGCAGCT GTACGACCGC
GGCATACGCC GCAGGCTGGC ACCGATGCTC GGCGGCAACC GGCGGCGCCT CGAGCTGGCC
TACAGCCTGA TGCTCACCCT GCCCGGCACG CCGGTGGTCC GCTACGGCGA CGAGATCGGC
ATGGGCGACG ACCTGAGCCT GCCGGAGCGC AACTGCGCGC GCACGCCGAT GCAGTGGTCC
ACCGAGCGCC AGGGCGGGTT CACCACCTCT TCCAAGCCGG TGCTGCCGGT GATCACGGGT
GGTGCCTACG GCTTCGAGCA TGTGAACGTG GCGGCGCAGC GGCGCGACCC CGAGTCGCTG
CTCAACTGGA TGGAACGCGT GTTCCGCATG CGAAAGGAAG TGCCCGAGAT CGGCTGGGGC
GACTTCGAGG TGGTTCCCAA CGAGGAGCGC GCGGTGCTCG TCATGCGCTA CGAATGGCGC
GGCAACGCGG CGGTCTTCGT GCACAACCTG GGCGACAGCC CGCTGGAAAT AAAGCTCGGC
GCCAAGGCGC TCGGCAGGCA CGGCGGGCAG CTGATCAACC TGCTCTCCAA CGCGCACAGC
CGCGCCAACT CGAAGGGAAA GCACTGCATG CTGCTGGAGC CCTACGGCTA CCGGTGGTTC
CGCGTCGGCC CGCTCGACTA TCTTCTCAAG CGCGAGGAGA TGTGA
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| Protein sequence | MINDLWYKNA VVYCLSVGTF MDSNGDGCGD FEGLTRRLEY LHGLGVTTLW LMPFHPSPRQ
DDGYDVSDFY NVDPRFGTLG DFVEFTHSAS RLGMRVLMDL VVNHTSDQHP WFQQARRDRK
SKYHNWYVWS DRKPARYTDG VVFPGVQKST WTFDKLARRW YFHRFYEFQP DLNTANPDVQ
AEILKIMGFW TQMGVSGFRM DAVPFVIGAK GPRVVRPTEK FDMLRQFREL LQWRRGDAII
LAEANVLPST NMAYFGDEGE RLHMMFNFQV NQHLFYAMAV ADARPLAKAL EATRARPATS
QWGIFLRNHD ELDLGRLRPA QRQRVFAAFG PEKDMQLYDR GIRRRLAPML GGNRRRLELA
YSLMLTLPGT PVVRYGDEIG MGDDLSLPER NCARTPMQWS TERQGGFTTS SKPVLPVITG
GAYGFEHVNV AAQRRDPESL LNWMERVFRM RKEVPEIGWG DFEVVPNEER AVLVMRYEWR
GNAAVFVHNL GDSPLEIKLG AKALGRHGGQ LINLLSNAHS RANSKGKHCM LLEPYGYRWF
RVGPLDYLLK REEM
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