| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1966 |
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| Symbol | |
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| ID | 7969759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2102085 |
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| End bp | 2104013 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792564 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002943878 |
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| Protein GI | 239814968 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.56575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCCCA CCGAAGTCGT CACGCCCGAG CAATTGCTGC ACGCACTGGA AGTCCAGAGC
CGCATGCCCA TCCTGCGCAT CGGCCAGGCC CTGATGGCGC TGGGCATGCT CACGGAAGAG
CAGCTGCGCG CCGGCCTCGA GCAGCAGCAG CTGGACCGCA GCGTGCCGCT GGGCGAGACG
CTGGTGCGCA TGGGTGTGGT GACGCGGGCC CAGTTGCAGG CCGCACTGGT GCGCAAGATG
GGCTACCCGC TCGTGAACCT GCACGAGTTC CCGGTGGCCG TGGACGCGCT GCGCACCATC
AGCCATGCCG TGGCCCGCCG CCTGCAGGTG ATGCCGCTCA TGATCCACGA TGGGCGCCTC
ATCCTCGCGC TCGACGATCC GGCCAGCCGC CACGCGGCCA TCGACGAAGT GGAGTTCATC
TCCCAGAGGA AGGTGGTGCC GGTGATCGGC GAATGCCTGG TGCTGGACAC CGTGCTCTAC
AAGGCCTACG GCAAGATCGG CACCGAATCG GCCGACCCGA CCGTCGTGCA CGATCCCTCG
CGGCCGCTGG ACTTCGACAT GGGCGGCGCG GGCCTCGGCA GCAGCCCCGG CCCGGGCACC
AGCCTGGGCA CCAGCGACCT GCTGGTCACG CTCGAGAAAG AGCGCCCCGC ACCGGCCATC
GAGGAGACGG CCATCGAGCA GTCGGACAAC TCGCTGGTGC GCATGATCAA CAGCATGATC
GTGGACGCGC ACCGCGAAGG CGTGTCGGAC ATCCACATCG AGAGCTATCC GGGCAAGGAA
AAGACCCGCA TCCGGTTTCG CCGCGACGGG CGGCTGCACA CCCACCTGGA GCTGCCGGCC
AGCTACCGCA ACGCGGTGGT CGCACGCGTG AAGATCATGT GCGACCTGGA CATCAGCGAA
AAGCGCAAGC CGCAGGACGG CAAGATCAAC TTCGCCAAGT ACTCGCCGCA GCACCGCATC
GAGCTGCGCG TGGCCACCAT CCCCACGGCC AACGGGCTCG AAGACGTGGT GATGCGCATC
CTGGCCTCGG CCAAGCCGAT CGCGCTGGAC AAGCTCGGGC TCTCGCCGCG CAATCTCTCG
GAGCTCACCA AGGCGGTGGA GCGCCCCTAC GGCATGGTGC TGTGCGTCGG GCCCACGGGC
TCGGGCAAGA CCACCACGCT GCATTCGGCC CTGATGCACA TCAACACGCC GGAGCGGAAG
ATCTGGACGG CCGAAGACCC GATCGAGATC ACCCAGCCCG GCCTGCGCCA GGTGCAGGTG
AATCCGCGCA TCGACTGGAC CTTTGCCAAG GCGCTGCGGG CCTTCGTGCG CGCCGATCCC
GACGTCATCA TGGTCGGCGA GATCCGCGAC GAGGAAACGG CCAAGACGGC GATCGAGGCC
TCGCTCACGG GCCACCTGGT GCTTTCCACG CTGCACACCA ACAGCGCGCC CGAAACCGTG
ACGCGGCTGC TGGACATGGG CATGGACCCC TTCAACTTCG CGGATTCGCT GCTCGCGGTG
CTGGCGCAGC GCCTGGTGCG GCGCCTGTGC AGCCACTGCC TGCAGAGCCG CCCCATGCGC
CCCGAGGAAG TCGAGGAGCT GCTGGCCGAC TACATGCACG CGTTCGCGGG TCAGGAGACG
CCGGCCGAAC GCGAGGCCGT GCGCAGCGGC TGGCTCGGCC AGCACGGCCG CGACGGCCGG
CTGCAGGCCT TTTCGAGCCC CGGATGCACG CAGTGCGACA ACACCGGCTT CAGCGGCCGC
GTCGGCATCC ACGAGCTGAT GGTGATCTCC AGGACGCTGC GGCGCCTGGT GCAAAGCGGC
GCGCGCGCCG AGGAACTGCA GGAAGCGGCG CTGCGCGAGG GCATGCGTAC GCTGCGCCAG
GACGGCATCG GCAAGGTCCT GTCGGGGCAG ACCACCATCG AGGAAGTCCG CGCAACCAGC
AACGCCTGA
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| Protein sequence | MSPTEVVTPE QLLHALEVQS RMPILRIGQA LMALGMLTEE QLRAGLEQQQ LDRSVPLGET
LVRMGVVTRA QLQAALVRKM GYPLVNLHEF PVAVDALRTI SHAVARRLQV MPLMIHDGRL
ILALDDPASR HAAIDEVEFI SQRKVVPVIG ECLVLDTVLY KAYGKIGTES ADPTVVHDPS
RPLDFDMGGA GLGSSPGPGT SLGTSDLLVT LEKERPAPAI EETAIEQSDN SLVRMINSMI
VDAHREGVSD IHIESYPGKE KTRIRFRRDG RLHTHLELPA SYRNAVVARV KIMCDLDISE
KRKPQDGKIN FAKYSPQHRI ELRVATIPTA NGLEDVVMRI LASAKPIALD KLGLSPRNLS
ELTKAVERPY GMVLCVGPTG SGKTTTLHSA LMHINTPERK IWTAEDPIEI TQPGLRQVQV
NPRIDWTFAK ALRAFVRADP DVIMVGEIRD EETAKTAIEA SLTGHLVLST LHTNSAPETV
TRLLDMGMDP FNFADSLLAV LAQRLVRRLC SHCLQSRPMR PEEVEELLAD YMHAFAGQET
PAEREAVRSG WLGQHGRDGR LQAFSSPGCT QCDNTGFSGR VGIHELMVIS RTLRRLVQSG
ARAEELQEAA LREGMRTLRQ DGIGKVLSGQ TTIEEVRATS NA
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