Gene Vapar_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1952 
Symbol 
ID7969745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2091489 
End bp2093012 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content69% 
IMG OID644792551 
ProductGalactarate dehydratase 
Protein accessionYP_002943865 
Protein GI239814955 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2721] Altronate dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGACA GCCCCCTGCT TCGCCTGCAC CCGCACGACA ACGTGCTGGT TGCCAAGACG 
CCCATCGCCC TTGGCGAAAC GATTGCCGAG TTCGGCGTGC GGGCGCGCGC GCAGATTCCC
GCGGGGCACA AGATTGCGTC GCGCGCCATT GCGGCCGGCG AGCAGGTGAA GAAGTACGAC
ACCGTCATTG GCGTGGCCTC GCGCGATCTG GAGGCGGGCG ACTACGCGCA CAGCCACAAC
CTCACGCTGG TCGACTCCTA CCGCGACCCG GCCTTCTGCC AGGACCTGCG GCCGGTGGCC
TACGTGCCCG AGGCCGAGCG CGCCACCTTC ATGGGCTTTG TGCGGGCCGA CTGCCGCGTG
GGCACGCGCA ACTTCATCGG CATCTTGTCG TCGGTCAACT GCTCGGCCAC TGTCATCAAG
CGCATCGCGG CGCACTTCAC GCCCGAGCGC CTGGCGGCCT TTCCCAACGT GGACGGCGTG
GCCGCCTTCG CGCAGACCAG CGGCTGCGGC ATGTCGTCGC CGAGCGAGCA TTTCGACGTG
CTGCGCCGCA CCTTGGCCGG CTATGCGCGC CATCCCAACC TGGCCGGCGT GCTGATCGTG
GGCCTGGGCT GCGAGCGCAA CCAGGTCGAT GCGCTGGTCG ACTCGCAGGG CCTGCAGCAG
GGCCGCCTGA TGCGCACGAT GGTCATGCAG GAGGTGGGCG GCACGCGCCA GACCATCGAG
GCCGGCATCC GCGCCGTGGA AGAAATGCTG CCCGAGGCCA ACGCGGCCGA GCGCACCCGC
GTGGGCGCCA ACCACCTGAA GATCGGCCTG GAGTGCGGCG GCTCCGACGG CTTCTCGGGC
ATCACGGCCA ACCCGGCATT GGGCGCCGCC ATGGACGTGC TGGTGCGCCA CGGCGGCACC
GCCATTCTTT CGGAAACGCC GGAGATCCAC GGCGTCGAAT TCATGCTCAC GCGGCGCGCC
GCCACGCCCG AGGTCGGCCA GAAGCTGCTC GACCGGCTGG CCTGGTGGGA GCGCTACACG
GCCGGCCAGA ACGCGCAGTT CAACGGCGTG GTGGGGCACG GCAACCAGGC CGGCGGGCTC
GCCAACATCT TCGAGAAATC GCTGGGCTCG GCCATGAAGG GCGGCACCAC GCCGCTGCAG
GCCGTGTACG AATATGCGGA GCCGATCGAC CAGGCCGGAT TCGTCTTCAT GGATTCGCCG
GGCTACGACC CGGTGGCCGT GACCGGGCAG ATCGCGAGCG GCGCGCAGCT GATCTGCTTC
ACCACCGGGC GCGGCTCGAT GTTCGGCAGC AAGCCCGCAC CCACCATCAA GCTGGCCAGC
AACACGCCGA TGTTCAAGCG CCTCGAGGAG GACATGGACA TCAACTGCGG CGTGGTGCTC
GACGGCGAAC TCTCGGTGCC CGAGCTCGGC CAGCAGATCT TCGAGCAGAT CCTGCGCCAT
GCCTCCGGCG AGCGGACACG CAGCGAAGCG CTGGGCCTGG GCGACCATGA ATTCGTGCCA
TGGCACCTGG GCATCGTCAG CTGA
 
Protein sequence
MTDSPLLRLH PHDNVLVAKT PIALGETIAE FGVRARAQIP AGHKIASRAI AAGEQVKKYD 
TVIGVASRDL EAGDYAHSHN LTLVDSYRDP AFCQDLRPVA YVPEAERATF MGFVRADCRV
GTRNFIGILS SVNCSATVIK RIAAHFTPER LAAFPNVDGV AAFAQTSGCG MSSPSEHFDV
LRRTLAGYAR HPNLAGVLIV GLGCERNQVD ALVDSQGLQQ GRLMRTMVMQ EVGGTRQTIE
AGIRAVEEML PEANAAERTR VGANHLKIGL ECGGSDGFSG ITANPALGAA MDVLVRHGGT
AILSETPEIH GVEFMLTRRA ATPEVGQKLL DRLAWWERYT AGQNAQFNGV VGHGNQAGGL
ANIFEKSLGS AMKGGTTPLQ AVYEYAEPID QAGFVFMDSP GYDPVAVTGQ IASGAQLICF
TTGRGSMFGS KPAPTIKLAS NTPMFKRLEE DMDINCGVVL DGELSVPELG QQIFEQILRH
ASGERTRSEA LGLGDHEFVP WHLGIVS