| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1944 |
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| Symbol | |
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| ID | 7971123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2081805 |
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| End bp | 2083169 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644792543 |
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| Product | type III effector Hrp-dependent outers |
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| Protein accession | YP_002943857 |
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| Protein GI | 239814947 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.382919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGCGA TTCCGGCCCC GGCCGTCGTC TACTACGGCG ACGATTTCAC CGGCGCCACC
GACACCCTCG GCACCGCCGC GCGCGCCGGC CTGCGGGCCC TGCTCTTCCT GAAGACGCCC
GACGCCGCGC GGCTCGCGCA GGCCGGGCCG CTCGACGTGC TGGGCATCGC AGGCGCCGCG
CGCGCCATGA CGCCCGAAGC CATGCAGGCC GAACTGGCCC CGGTCGCCGC GCTGTTCCGC
TCGCTGGGCG CGCGCGTGCT GCACTACAAG ACCTGCTCCA CCTTCGACAG CGCGCCGCAC
ATCGGCTCCA TCGGCGCGGC CATGCGTGCG CTGCGCGGCG CTGTCGAACA GCCCTGGACC
GCGATCGTCG GCGGCCAGCC CAACATCGGC CGGCACTGCC TGTTCGGCAA CCTGTTCGCC
GCGGCCGGCG CCGGCGGCGA GGTGTTCCGC ATCGACCGCC ATCCGACGAT GAGCCGGCAT
CCCGTCACGC CGATGCATGA GGCGGACCTG AGGCTGCACC TGGCCAAGCA GGGCCTGGCC
GGCGTGCGCT CCATTCCTTT CACGGCCGCG TCGCAGGGAC CGGAAGCGCT CGGCGAAGCG
CTGCAACGCG CGCTGCGCCC GGACGCCGGC AACACCACCG AAGCCGTGCT GTTCGACGTG
GCCGATGCGC CGCAACTCGC CGCCATCGGC CAGGTGCTGT GGGCCGAAGC TGGGCGCGCC
ACGCTGCTGG CCGTGGGGCC GAGCAGCGTG GTCGATGCGC TGGCGGGCGC ACTCGGCACG
CGCAGCGGTG CGCAAGCGGG CCCACGCCGT ACGGGCCCAG CGCGCGGCCC CGTGCTGGTG
CTTGCCGGCA GCCTCTCGCC CGTCACCGCG CGCCAGGTGG CGGCCGCACG CTCATTCGAC
ACCGTGTGGC TCGACGCGCC GCGCCTTGCG CAGCGCGATG CGGCCACGCT GGAGCGGCAT
GCGCGCGACA TCGCGCAGGG CCTCGCTCGC GGCCGCAACG TGCTGGCCTG CACCCGGCCC
GCCAACGAAG CGCCCACCGG GGCCGACAAC GAGGTCGATG CCCAGGCGCT CTCGCGCGCC
GGCGGCGACC TGCTCGCCAG GGTGCTGGCC ATGGCGCCGC TCCAGCGCGT CGGCATTGCC
GGCGGCGACA CCTCGAGCCA CGCCGTGCAG GCGCTCGATG CCTGGGGGCT TTCCTATGTG
GCCGACATGG GCGCCGGCGC ATCGCTCTGC CGCGTGCGCA GCGACGATGC CGCGCTGGAT
GGCATGGAGA TCATGCTCAA GGGCGGCCAG ATGGGCTCCG ATGACGTGTT CGAGCGGCTG
GTGCATGGCG ATGCGGGCAG CGCCGTCTCG TCACGCAATT GTTGA
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| Protein sequence | MPAIPAPAVV YYGDDFTGAT DTLGTAARAG LRALLFLKTP DAARLAQAGP LDVLGIAGAA
RAMTPEAMQA ELAPVAALFR SLGARVLHYK TCSTFDSAPH IGSIGAAMRA LRGAVEQPWT
AIVGGQPNIG RHCLFGNLFA AAGAGGEVFR IDRHPTMSRH PVTPMHEADL RLHLAKQGLA
GVRSIPFTAA SQGPEALGEA LQRALRPDAG NTTEAVLFDV ADAPQLAAIG QVLWAEAGRA
TLLAVGPSSV VDALAGALGT RSGAQAGPRR TGPARGPVLV LAGSLSPVTA RQVAAARSFD
TVWLDAPRLA QRDAATLERH ARDIAQGLAR GRNVLACTRP ANEAPTGADN EVDAQALSRA
GGDLLARVLA MAPLQRVGIA GGDTSSHAVQ ALDAWGLSYV ADMGAGASLC RVRSDDAALD
GMEIMLKGGQ MGSDDVFERL VHGDAGSAVS SRNC
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