| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1942 |
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| Symbol | |
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| ID | 7971121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2077486 |
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| End bp | 2080458 |
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| Gene Length | 2973 bp |
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| Protein Length | 990 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792541 |
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| Product | protein of unknown function DUF940 membrane lipoprotein putative |
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| Protein accession | YP_002943855 |
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| Protein GI | 239814945 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCCCC CGCCCCCGCC CGGCCCCATC ACCAACCCCT TCCGCCTCAG CCTGCTGGCC
GCCGCGATCG TGTTGATGAT TCCCTCCGCC CATGCCGCAG CCACCGACCG CCCTGTTGGC
GGCGCTGTGC AAGTGCGCCC GGGCGAGCGG CTCAGCGACT GGCTCTTGCG CCAACCCGAA
GATGCGGCCG GCCCCGGCCT TGCATGGCAG GTGCCGCAGG AGCTGCTCGC ACAGCAGTAC
CTGAAAGAGT CGCTGCTGGT GCGGGTGGAA GCGGCCGTTC GATCGGCCTC GCCTGAAGAA
CGGGCTTCGC GCGAGCAGCT CTTGTCCGTG CTGCAGAGCC TGCCGGCCAC CGGCCGCGTG
GCGCTGGGCA TTGTCGATCC GCGCTGGCTG CAGGCGAATC CCGGGCAAGA CCCGGTGCTG
CGCGAAGGCC AGCGGCTCGC GGTGCCGCCC GCCCCCCTGC GCTCGGTGAC CGTGGTGCAG
CCCGACGGCA GCTTTTGCCA GGTGGCGCAC GAAGGTGGCC GCTCGGTGCT CGACTACCTG
AGCGCCTGCG GCCTGGGCAG CGGCGCCGAC TGGGCCTGGA TCGCGCAGCC CGACGGCCGC
ACCGCGCGCG CAGGCATCGG CGCCTGGAAT GCCGAGCCCG CCGACGAACC CGCGCCCGGC
GCCTGGATCT GGGCCCCGCC GCGCCGCATG GCCGCCCTGG CGGACCTGTC GGAAGGCCTC
ATCAAGTTCC TTGCCGTGCA AGGCCCGTCG CCGCAGGAAC CCACCACCAC CGCTCCCCCG
GCCGCCAACG CGCCCGTGTT CGCCGCGCCC ACCGTCGCCG CCACGCTGCC CGAGGCCGTG
GCCTCGCAGC CGCGCCCGCT CGACATCAGC GGCAACGACT GGGGCGAAAC CGGCCTGCTG
CAAACGCCAT CGGCCCGCAT GGGCGTGGCC GGCGACACGC GCGCATCGCT CACGTCGATC
TGGCCCTACA CGCGGCTGAA CGTGATGTTC CAGCCCTTCG ACTGGATGGA AGCGGGCTTT
CGCTACACCT CCATTTCCAA TCGCACCTAC GGAGTCAGCA CCACCGGCCA GTCGAACAAG
GACAAGAGCA TCGACATCAA GCTGCGGCTG CTCAAGGAAA CCGCCTTCGT GCCCGAGCTT
GCACTGGGCT TTCGCGACCT GGGCGGTACC GGCCTGTTCT CCGGCGAGTA CCTGGTGGCA
AGCAAGCGCT GGTACGACCT CGACTTCAGC CTTGGCATCG GCTGGGGCTA CCTGGGCGCG
AGCGGCAACA TCAGCAACCC CTTCAAGCTG CTGGGCAGCC GCTTCGACAC CCGCGGCAAC
TCGAGCACCA GCCCAGGCAG GTTCGGGTCC TACTTTCGTG GCCCGGCCGC CCTCTTTGGC
GGCGTGCAGT GGCGCACGCC GTGGGACCCG CTCACGCTCA AGCTCGAATA CGAAGGCAAC
GACTACCAAA GCGAGCCGCA GAACAACAAC CAGCGCCAGC GCTCGCCCAT CAACATCGGC
CTGGCTTACC AGGTGTCACC CAAGGTCACG CTGTCTGCCG GCTTCGAGCG CGGGGACAAG
TTCATGATTG GCCTCACGCT GTCGAGCAAC CTGGCCGCGT CGCAGTCGCC CAAGCCGCTC
GACCGGCCGC TGCCGGAATT CAGGCCAGAG GCGGCCCCGC GCTCCCCCGG CTGGGCCACC
ACCGCGGCGG AGATCGAGGC GCAGACCGAA TGGATCGTCG AGCGCATTGC GCCCAAGGAC
GACGTGCTGC ACGTGTGGGT GACCGACAGC AACACCGTCT ACCGCACCGC GCGCGTCGAA
AAAGCCATTG CGGTGCTTCA CCACGATGCG CCCGACGCCA TCAAGAGCTT TGTCTTTCAC
TACGCCGAGC GCGGCCTTGC CGTGCATGCG CAAGCCGTCG AACGCGCCGA ATGGGTGGCT
GCGCGCGTCG AGGCCTTGCC GCCGCACGCC GCGCGGGCCG TGTCCAAGCG CGACTACGAA
CCCGAGCTGG CCCGCCCCGA CGACACGCGC AGCAGCCCCG CCCAGAACAC CGCCGCCACC
GAGGCCGCCG CTCCTGAAAC GAACGCCCCC TGGGTGCGCC CCCGCGACAA GTTCACCTTT
GGCATTGCGC CCAGCTATGG CCAGATCGTC GGCGGGCCCG ACGCCTTCCT GCTCTACCAG
CTTGGCATCC AGGCCACCGC CGAATACCGC TTTACCCAGC GCACCTGGCT CAGCGGCGCG
GTCAATCTGC GGCTGGCCGA CAACTACGAC AAGTTCACCT ACACCGCGCC CAGCAACCTG
CCGCGCGTGC GCACCTACCA GCGCGAGTAC GTCACCTCCA GCCGCTTCAC CATTCCGTCG
CTGCAGCTCA CGCATGTGGG GCAGCTGTCG AGCAACCACT ACTACAGCGT GTATGGCGGC
CTGCTCGAAT CCATGTTTGC GGGCGTGGGC GCCGAATGGC TGTACCGGCC CGCGCGCTCG
CCGGTGGCCT TTGGCGTGGA CATCAACCGC GTGCGCCAGC GCGACTTCAA CCAGGACTTT
GGCCTGCGCG ACTACAAGGT GACCACCGGC CACGCCACCC TTTACTGGGA CACCGGCTGG
AACGGCGTCA TGGCCAAGAT CAGCGCGGGC CAGTACCTTG CCGGCGACCG CGGCGTGACG
CTCGAAGTCA TCCGCCGCTT CGACAACGGC TTTGTGCTGG GAGCCTACGC CACCAAGACC
AATGTCTCGT CAAGGCAGTT TGGCGAAGGC GACTTCGACA AGGGCATCTA TCTTTCAATT
CCGCTCGATG CGCTGCTGCC GCGGTCCAGC AAGTTTGCAC TGGGCTTTGC ATGGTCGCCG
CTCACGCGCG ACGGCGGCGC GCGCCTGGCC CGCAGCAACA CCCTTTATGA ACTGACCTCC
GTGCGCGACC AGGGCGCATT CAACTTTGCG GCCCCGCCAG ACAACAAGCC GCGTGCCGGA
GACAACCTCT TGAATTTCGA TCGCAGCCCA TGA
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| Protein sequence | MSPPPPPGPI TNPFRLSLLA AAIVLMIPSA HAAATDRPVG GAVQVRPGER LSDWLLRQPE
DAAGPGLAWQ VPQELLAQQY LKESLLVRVE AAVRSASPEE RASREQLLSV LQSLPATGRV
ALGIVDPRWL QANPGQDPVL REGQRLAVPP APLRSVTVVQ PDGSFCQVAH EGGRSVLDYL
SACGLGSGAD WAWIAQPDGR TARAGIGAWN AEPADEPAPG AWIWAPPRRM AALADLSEGL
IKFLAVQGPS PQEPTTTAPP AANAPVFAAP TVAATLPEAV ASQPRPLDIS GNDWGETGLL
QTPSARMGVA GDTRASLTSI WPYTRLNVMF QPFDWMEAGF RYTSISNRTY GVSTTGQSNK
DKSIDIKLRL LKETAFVPEL ALGFRDLGGT GLFSGEYLVA SKRWYDLDFS LGIGWGYLGA
SGNISNPFKL LGSRFDTRGN SSTSPGRFGS YFRGPAALFG GVQWRTPWDP LTLKLEYEGN
DYQSEPQNNN QRQRSPINIG LAYQVSPKVT LSAGFERGDK FMIGLTLSSN LAASQSPKPL
DRPLPEFRPE AAPRSPGWAT TAAEIEAQTE WIVERIAPKD DVLHVWVTDS NTVYRTARVE
KAIAVLHHDA PDAIKSFVFH YAERGLAVHA QAVERAEWVA ARVEALPPHA ARAVSKRDYE
PELARPDDTR SSPAQNTAAT EAAAPETNAP WVRPRDKFTF GIAPSYGQIV GGPDAFLLYQ
LGIQATAEYR FTQRTWLSGA VNLRLADNYD KFTYTAPSNL PRVRTYQREY VTSSRFTIPS
LQLTHVGQLS SNHYYSVYGG LLESMFAGVG AEWLYRPARS PVAFGVDINR VRQRDFNQDF
GLRDYKVTTG HATLYWDTGW NGVMAKISAG QYLAGDRGVT LEVIRRFDNG FVLGAYATKT
NVSSRQFGEG DFDKGIYLSI PLDALLPRSS KFALGFAWSP LTRDGGARLA RSNTLYELTS
VRDQGAFNFA APPDNKPRAG DNLLNFDRSP
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