| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1936 |
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| Symbol | |
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| ID | 7971115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2070469 |
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| End bp | 2071134 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644792535 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
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| Protein accession | YP_002943849 |
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| Protein GI | 239814939 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACTATCA GTGATCTGCA GCAAACCGTG GTCGTTTTCG ATCTGGACGA CACGTTGTAT
TCAGAGTCGG ACTACGTTCG CTCCGGCATC CGTCATGTTG GGACTTGGCT TGAAAAGCTC
TGCGGTGCCG ATCTGCAAGC GCAGATAGCC GAGGCCATCG TGCATCCGAA AGAAGACTGG
ATCGGTCGCT TGTGTACTGC TGCGAATTTT CCTCTCGCGG CGAAGGAATC GCTGTTATGG
ATGTATCGGC TCCACGCTCC TGAAATCAGC TTGACCGCCG AATGCAAACA GATGTTGGAC
AGGTTGGAGC ACAGGTGCAT GCGTGTTCTC GTCCTTACCG ACGGGCGAGG CGTGACACAA
AGGATCAAGC TTCAGGCGCT GGGGCTTTCG CGGTTCCGAG CCTACGTGTC CGAAGACTAC
CAATCGGAGA AGCCCGATGC GCTGCGCTTT CGAGCCATCG AACAGGACTA TCCCGCCAAG
TCTTATTTCT ACGTGGGCGA CAACCCACGC AAAGACTTCA TCGCTTGCAA TGCCCTGGGT
TGGACCGGTG TCGGCTTGCG CGGCAAGGGC GCGATTCACT CGCAAGATCT GAGCAACGTC
TTGCCTGATG CCTTACCGAA TTATTGGATC GATGAATGGC ACGAACTGCT TGAGCTCCTA
TGCTGA
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| Protein sequence | MTISDLQQTV VVFDLDDTLY SESDYVRSGI RHVGTWLEKL CGADLQAQIA EAIVHPKEDW
IGRLCTAANF PLAAKESLLW MYRLHAPEIS LTAECKQMLD RLEHRCMRVL VLTDGRGVTQ
RIKLQALGLS RFRAYVSEDY QSEKPDALRF RAIEQDYPAK SYFYVGDNPR KDFIACNALG
WTGVGLRGKG AIHSQDLSNV LPDALPNYWI DEWHELLELL C
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