| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1925 |
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| Symbol | |
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| ID | 7971104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2058726 |
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| End bp | 2059844 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792524 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_002943838 |
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| Protein GI | 239814928 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGGCG TGGCCGTGCT TCAGGGCTGC GCCGTGGCTC CGGGCATGGG TACCGTCGAG
CCGTACCAGG TTGCTGAAGA CCTGCCCCCC AAGTTCCAGT ACCTGCCAGA CGCCGCACCC
GAAGACCGGA TCACCCCCAT CACCCCGGCT CTTGTGCGCA CACTGGCCAA AACCTCGCCG
AAGGGCGTGC CGCCTGAAGT GCGGGCGCTT TTCGGCAAGC CGCAGCGTTA CACCATTGGC
CCTGGAGATG TGGTGGGCGT CATCGTGTAT GACCACCCCG AACTGCTGCC TAACTCTGGC
GCCGTCATCT CGCAGCAGGT TGACCCCACC GGCGTGAGCG CGGCTCCGGG CTTCATCGTC
GATTCTTCCG GCGAAATCGC CTTTCCCTAC GTCGGCCGTG TCAGGGTTGC GGGCCTTACC
GAGGCCGAGG CCGGCGACCT GATTTCCAAG CTCATCGTGA CCCAGGTGCG CGAGCCCGAA
GTGACTGTGC GCATCCAGTC CTTCCGCAGC CGCCGCGCCT ATATAGAAGG CGAAGTACGT
GCGCCAGGCT CGCAGATCTT CACCGACGTG CCCATGACGC TGAGCGAGGC CATCAACCGC
GCCGGCGGCA TCACCGCCAA CGGCAACCGC TCGGCCGTCA CCTTGGTGCG CGACGGCAAG
TCCATCGACA TCGACCTCAC GCGCCTGCGC GAAGCCGGCC GCGATGGGAA TGACATTCCC
CTGAAAAACG GCGACACCGT CAACGTGGCA AGCCGCGAAG ACGCCAAGGT GTTCGTGATG
GGCGAAATCC TGCGCCCCTC GGCACTCCCG GTGCGCAGCA ACGGCCGCCT CAACCTGAAC
GAGGCGCTGG GCGAAGCGGG CGGCCCGGTG CTCACCACCT CCAACCCCGG CCAGATCTAC
GTGATTCGCC AAGGTGCCAC CGGCTTGCCC GCGATCTTCC ACCTGGACGC CAAGAACCCC
GCCGCCATGG TGCTGGCCAG GCAGTTCAGC CTGGAGCCTC AGGACGTGGT CTACGTCGAC
CCGGTGCCAC TCGTGAAGTG GAATCGCGTG ATCAGCTTGA TCTTGCCCGC AGCGCAGGTA
GTGAACCTGG GTAGCGCAAC GGCTGACCGG GTCCGCTGA
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| Protein sequence | MLGVAVLQGC AVAPGMGTVE PYQVAEDLPP KFQYLPDAAP EDRITPITPA LVRTLAKTSP
KGVPPEVRAL FGKPQRYTIG PGDVVGVIVY DHPELLPNSG AVISQQVDPT GVSAAPGFIV
DSSGEIAFPY VGRVRVAGLT EAEAGDLISK LIVTQVREPE VTVRIQSFRS RRAYIEGEVR
APGSQIFTDV PMTLSEAINR AGGITANGNR SAVTLVRDGK SIDIDLTRLR EAGRDGNDIP
LKNGDTVNVA SREDAKVFVM GEILRPSALP VRSNGRLNLN EALGEAGGPV LTTSNPGQIY
VIRQGATGLP AIFHLDAKNP AAMVLARQFS LEPQDVVYVD PVPLVKWNRV ISLILPAAQV
VNLGSATADR VR
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