Gene Vapar_1923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1923 
Symbol 
ID7971102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2057064 
End bp2057570 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content66% 
IMG OID644792522 
ProductSpore coat U domain protein 
Protein accessionYP_002943836 
Protein GI239814926 
COG category[S] Function unknown 
COG ID[COG5430] Uncharacterized secreted protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC TCTCCCTCAT CGTTGCAGCC ACCCTTGCAG TCACCACCAG CGCTGTCTTG 
GCAGCCACGA GCCCGGCCAC GGCCACGTTT CAGGTCCTGA TCACTGTGGC CAAGGCCTGC
TCGGTCGTGG CGGGCGCCGG CTCGAAGATC GACTTCGGTA CTGTCGATTC GTCGGCCACC
AACCTGAGCG GCAACAGCAA CATCAGCGTG ACCTGCTCCA AGACCACGCC GTACAACATC
GGCCTGCTGC CTTCGAACAA CAACACCACC GGCGCCGGCG TGATGAGCCC CGCAAGCGGT
TCGGACACGG TGGCCTACCA GCTCCGTTCG GTGAGCGCTA CGGGCTCGGT CTGGGGCAGC
ACGGCAACGT CCACCGCCGT GGGCAACGGC GTGGCCGGCA CCGGCACCGG CGCAGCGCAG
ACGATCCCCG TGTACGCCAC GGTTGCCAGC GCCAACGTGA CGCCTGGCGC CTACTCGGAC
ACGGTGACGG TCCAGGTCAA CTACTGA
 
Protein sequence
MKKLSLIVAA TLAVTTSAVL AATSPATATF QVLITVAKAC SVVAGAGSKI DFGTVDSSAT 
NLSGNSNISV TCSKTTPYNI GLLPSNNNTT GAGVMSPASG SDTVAYQLRS VSATGSVWGS
TATSTAVGNG VAGTGTGAAQ TIPVYATVAS ANVTPGAYSD TVTVQVNY