Gene Vapar_1920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1920 
Symbol 
ID7971099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2052923 
End bp2053951 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content66% 
IMG OID644792519 
ProductSpore coat U domain protein 
Protein accessionYP_002943833 
Protein GI239814923 
COG category[S] Function unknown 
COG ID[COG5430] Uncharacterized secreted protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTTTT CTTTGAGCCG CACTTTGCGG GTGCTGCGCC TGCCGCTGTT TTGCGCGCTG 
CTTTGGTGGG TGGGGGTGGG GAGTGCGCAG GCCACGATCA CTTGCACGGC AGAGATGACG
AACCTGGCCT TCGGTACGGT CGACCTGGTC GACGGGAGCA CCCCCTCCTC TCCCACCGCC
ACGCTGAGCT ACAACTGCAC CAACAACAGC ACCACCGCCG AGCAGGTCAG GATCTGCTTC
AACATTGGCG ACGGCGACGA AGGCCTGACC AACTTCAACC CGCGCGTCAT GAAGAGCGGT
ACGAACAGCT TGAAGTTCCA GCTCTACCAG GGAACGAGCA ACGTCATCTG GGGTTCAAGC
GGCAACGGGA CGGTGCCGAA CCCCTTCGTC ACCACGTTCA CCGTTCCTCG TCGGACTTCG
GGCACCATTC CGGGGGTCTT CTCGGGAAGC ACGACCATGC GAGGGGATCT GATCGCCCTC
CAGGGCGCCG TACCTCCGGG CGCCTACCAG GACAACTTCG GTACCGTTCA CACCTCGATC
ACGTTCTCGT CGAGCACGGG CGCCACGCCC GCAGGGTGCG GCGGCACGGC GGCAGACAAC
TTTCCGTTCG TGGTGACCGC CAACGTCGCC AAAAGCTGCC TGGTCACGGC CGACCCGCTG
AACTTCGGCA CCATCGACGG CCTGCCGGGC ATGGCCGACC GGGACCGGTT CAGCACCATC
ACCGTCACCT GCACCACGCC CACCAGCTAC ACGGTGGCGC TGACGCCCTC CAACAATTCG
ACGGCCGGCG CGGGGTCGAT GACGCCGACG GGCGGTGTGC CCGGCAACAC GGACTCGGTG
CCCTACCGCC TCTACAGCAA TGCCGGCCGG TCGGTCTCGT GGGGCAGCGT CATAGGCACC
AACACCGTCG CAGGCACGGG CACGGGAGCA GCCCAGACGC TGACCGTGTA CGGCCGCGTC
CTTGGCAGCA ACGTGAACGT GCGGCCGGAC AGCTACCTGG ACACCGTGAC GGTCACCGTG
ACCTACTGA
 
Protein sequence
MSFSLSRTLR VLRLPLFCAL LWWVGVGSAQ ATITCTAEMT NLAFGTVDLV DGSTPSSPTA 
TLSYNCTNNS TTAEQVRICF NIGDGDEGLT NFNPRVMKSG TNSLKFQLYQ GTSNVIWGSS
GNGTVPNPFV TTFTVPRRTS GTIPGVFSGS TTMRGDLIAL QGAVPPGAYQ DNFGTVHTSI
TFSSSTGATP AGCGGTAADN FPFVVTANVA KSCLVTADPL NFGTIDGLPG MADRDRFSTI
TVTCTTPTSY TVALTPSNNS TAGAGSMTPT GGVPGNTDSV PYRLYSNAGR SVSWGSVIGT
NTVAGTGTGA AQTLTVYGRV LGSNVNVRPD SYLDTVTVTV TY