Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1920 |
Symbol | |
ID | 7971099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2052923 |
End bp | 2053951 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644792519 |
Product | Spore coat U domain protein |
Protein accession | YP_002943833 |
Protein GI | 239814923 |
COG category | [S] Function unknown |
COG ID | [COG5430] Uncharacterized secreted protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTTTT CTTTGAGCCG CACTTTGCGG GTGCTGCGCC TGCCGCTGTT TTGCGCGCTG CTTTGGTGGG TGGGGGTGGG GAGTGCGCAG GCCACGATCA CTTGCACGGC AGAGATGACG AACCTGGCCT TCGGTACGGT CGACCTGGTC GACGGGAGCA CCCCCTCCTC TCCCACCGCC ACGCTGAGCT ACAACTGCAC CAACAACAGC ACCACCGCCG AGCAGGTCAG GATCTGCTTC AACATTGGCG ACGGCGACGA AGGCCTGACC AACTTCAACC CGCGCGTCAT GAAGAGCGGT ACGAACAGCT TGAAGTTCCA GCTCTACCAG GGAACGAGCA ACGTCATCTG GGGTTCAAGC GGCAACGGGA CGGTGCCGAA CCCCTTCGTC ACCACGTTCA CCGTTCCTCG TCGGACTTCG GGCACCATTC CGGGGGTCTT CTCGGGAAGC ACGACCATGC GAGGGGATCT GATCGCCCTC CAGGGCGCCG TACCTCCGGG CGCCTACCAG GACAACTTCG GTACCGTTCA CACCTCGATC ACGTTCTCGT CGAGCACGGG CGCCACGCCC GCAGGGTGCG GCGGCACGGC GGCAGACAAC TTTCCGTTCG TGGTGACCGC CAACGTCGCC AAAAGCTGCC TGGTCACGGC CGACCCGCTG AACTTCGGCA CCATCGACGG CCTGCCGGGC ATGGCCGACC GGGACCGGTT CAGCACCATC ACCGTCACCT GCACCACGCC CACCAGCTAC ACGGTGGCGC TGACGCCCTC CAACAATTCG ACGGCCGGCG CGGGGTCGAT GACGCCGACG GGCGGTGTGC CCGGCAACAC GGACTCGGTG CCCTACCGCC TCTACAGCAA TGCCGGCCGG TCGGTCTCGT GGGGCAGCGT CATAGGCACC AACACCGTCG CAGGCACGGG CACGGGAGCA GCCCAGACGC TGACCGTGTA CGGCCGCGTC CTTGGCAGCA ACGTGAACGT GCGGCCGGAC AGCTACCTGG ACACCGTGAC GGTCACCGTG ACCTACTGA
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Protein sequence | MSFSLSRTLR VLRLPLFCAL LWWVGVGSAQ ATITCTAEMT NLAFGTVDLV DGSTPSSPTA TLSYNCTNNS TTAEQVRICF NIGDGDEGLT NFNPRVMKSG TNSLKFQLYQ GTSNVIWGSS GNGTVPNPFV TTFTVPRRTS GTIPGVFSGS TTMRGDLIAL QGAVPPGAYQ DNFGTVHTSI TFSSSTGATP AGCGGTAADN FPFVVTANVA KSCLVTADPL NFGTIDGLPG MADRDRFSTI TVTCTTPTSY TVALTPSNNS TAGAGSMTPT GGVPGNTDSV PYRLYSNAGR SVSWGSVIGT NTVAGTGTGA AQTLTVYGRV LGSNVNVRPD SYLDTVTVTV TY
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